View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15516_low_9 (Length: 285)
Name: NF15516_low_9
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15516_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 103 - 282
Target Start/End: Original strand, 27956009 - 27956193
Alignment:
| Q |
103 |
tccaacctcaaaaacatagaagctttcaagttta-gtaaaaaatctact----atactatcaactataattattaaagatggttctttcttttgttggaa |
197 |
Q |
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| T |
27956009 |
tccaacctcaaaaacttagaaactttcaagttcaagtaaaacaactaattaatatactatcaactataattattaaagatggttctttcttttgttggga |
27956108 |
T |
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| Q |
198 |
ggatacaaaagggtatttcacactttgtacacaaaaggcatgatttcagtgaagagttggtaccagaagatgttagagaaggata |
282 |
Q |
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| T |
27956109 |
agatacaaaagggtatttcacactttgtacacaaaaggcatgatttcagtgaagagttaatggcagaagatgttagggaaggata |
27956193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 27959268 - 27959378
Alignment:
| Q |
172 |
aaagatggttctttcttttgttggaaggatacaaaagggtatttcacactttgtacacaaaaggcatgatttcagtgaagagttggtaccagaagatgtt |
271 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27959268 |
aaagatggttctttcttttgttgggaagatacaaaagggtatttcacactttgtacacaaaagacatgatttcagtgaagagttggtaccagaagatgtt |
27959367 |
T |
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| Q |
272 |
agagaaggata |
282 |
Q |
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| T |
27959368 |
agggaaggata |
27959378 |
T |
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