View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15517_high_4 (Length: 351)
Name: NF15517_high_4
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 42955326 - 42955639
Alignment:
| Q |
18 |
gattttgtgagccaactgggcaagagtatatggataaaaagttgtttgagcaaaaaatatttcaaatgaatagatatactcacatttgagaatagattgt |
117 |
Q |
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| T |
42955326 |
gattttgtgagccaattgggcaagagtatatggataaaaagttgtttgagcacaaaatatttcaaatgaatagatagactcacatttgagaagagattgt |
42955425 |
T |
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| Q |
118 |
tcgtatatcaagtgtgattaaagtctcacattgaataaaaaat-acatgttgagaatcatatacatgaaatggtcatgcctaatgtcttgaggtttctga |
216 |
Q |
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| T |
42955426 |
tcgtatatcaaatgtgattaaagtcttaaattgaataaaaaattacatgttgagaatcatatacatgaaatggtcctgcctaatgtcttaaggtttctga |
42955525 |
T |
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| Q |
217 |
tgaatgtgtggtttccaaatcacttatatggttgttcttaattcaatgtgatgatcaagagatgaaaaaacatttattatcaaagtacatgta-cccacg |
315 |
Q |
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| T |
42955526 |
tgaatgcgtggtttccaaatcactgatatagttgttcttaattcaatgtgatgatcaagagatgaaaaaacattcattatcaaagtacatgtaccccacg |
42955625 |
T |
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| Q |
316 |
agagtgtcatggaa |
329 |
Q |
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| T |
42955626 |
agagtgtcatggaa |
42955639 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 13006393 - 13006346
Alignment:
| Q |
225 |
tggtttccaaatcacttatatggttgttcttaattcaatgtgatgatc |
272 |
Q |
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| T |
13006393 |
tggtgtccaactcacttatgtggttgttcttaatccaatgtgatgatc |
13006346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 42724965 - 42725073
Alignment:
| Q |
82 |
aatgaatagatatactcacatttgaga-atagattgttcgtatatcaagtgtgattaa-agtctcacattgaataaaaaatacatgttgagaatcatata |
179 |
Q |
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|||||||||||| |||||| ||||| | |||||||| | || |||||||| | ||| | ||| ||||||||||||||| |||| |||||||| ||||| |
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| T |
42724965 |
aatgaatagataagctcacacttgagtgagagattgttggaatgtcaagtgttagtaagaatcttacattgaataaaaaacacattttgagaataatata |
42725064 |
T |
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| Q |
180 |
catgaaatg |
188 |
Q |
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| T |
42725065 |
gatgaaatg |
42725073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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