View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15517_low_11 (Length: 248)
Name: NF15517_low_11
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30594128 - 30594358
Alignment:
| Q |
1 |
attttataaaaataatcataatcttttttgtggttgtttattggaataaaaatcatttctttatagaaaaaataattaaatttgtttaaatccaactata |
100 |
Q |
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| T |
30594128 |
attttataaaaataatcataatcttttttgtggttgtttattggaataaaaatcatttctttatagaaaaaataattaaatttgtttaaattcaactata |
30594227 |
T |
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| Q |
101 |
tataaaagagattttttattacaaaattgtctcaatctcatgatacttatcttctctctcctctaaaaattgcatgaatcttttgataattatcctccgt |
200 |
Q |
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| T |
30594228 |
tataaaagagattttttattacaaaattgtctcaatctcatgatacttatcttctctctcctctaaaaattgcatgaatcttttgataattatcttccgt |
30594327 |
T |
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| Q |
201 |
ccaacaaatgttatttatgttgtcacgagtg |
231 |
Q |
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| T |
30594328 |
ccaacaaaagttatttatgttgtcacgagtg |
30594358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 26209124 - 26209182
Alignment:
| Q |
70 |
aaataattaaatttgtttaaatccaactatatataaaagagattttttattacaaaatt |
128 |
Q |
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| T |
26209124 |
aaataatttaatttgtttagatacaactatatatataagggattttttgttacaaaatt |
26209182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 5246463 - 5246616
Alignment:
| Q |
14 |
aatcataatcttttttgtggttgtttattggaataaaaatcatttctttatagaaaaaataattaaatttgtttaaatccaactatatataaaagagatt |
113 |
Q |
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| T |
5246463 |
aatcagaatctattttgtgtttgtttatcgtaataaaaatcacttattt-ta-aacaaataatttagtttgtttggatacaac--tatataaaagagatt |
5246558 |
T |
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| Q |
114 |
ttttattacaaaattgtctcaatctcatgatacttatcttctctctcctctaaaaatt |
171 |
Q |
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| T |
5246559 |
tttttttacaaaattagttcaatcttttaaaccttattttctctctcatctaaaaatt |
5246616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 25458588 - 25458518
Alignment:
| Q |
99 |
tatataaaagagattttttattacaaaattgtctcaatctcatgatacttatcttctctctcctctaaaaa |
169 |
Q |
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| T |
25458588 |
tatataaaagcgattttttgttacaaaattagttcaatcttttgatccatattttctctctcctctaaaaa |
25458518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 1476798 - 1476728
Alignment:
| Q |
98 |
atatataaaagagattttttattacaaaattgtctcaatctcatgatacttatcttctctctcctctaaaa |
168 |
Q |
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| T |
1476798 |
atatgtaaaagagattttttgttacaaaattatctaaatcttttgacatttattttctctctcctctaaaa |
1476728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 11633013 - 11633124
Alignment:
| Q |
14 |
aatcataatcttttttgtggttgtttattggaataaaaatcatttctttatagaaaaaataattaaatttgtttaaatccaactatatataaaagagatt |
113 |
Q |
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| T |
11633013 |
aatcaaaatctattttgcgtttgtttaccgtaataaaaatcattttttttta-aataaataatctagtttgtttggatacaactata--taaaagagatt |
11633109 |
T |
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| Q |
114 |
ttttattacaaaatt |
128 |
Q |
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| T |
11633110 |
ttttattacaaaatt |
11633124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 9269324 - 9269264
Alignment:
| Q |
99 |
tatataaaagagattttttattacaaaattgtctcaatctcatgatacttatcttctctct |
159 |
Q |
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|||||||||||||||||||||||||||||| ||||| || ||| |||||| |||||||| |
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| T |
9269324 |
tatataaaagagattttttattacaaaattaactcaaacttttgacacttattttctctct |
9269264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 4780716 - 4780687
Alignment:
| Q |
99 |
tatataaaagagattttttattacaaaatt |
128 |
Q |
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| T |
4780716 |
tatataaaagagattttttattacaaaatt |
4780687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 27435180 - 27435229
Alignment:
| Q |
2 |
ttttataaaaataatcataatcttttttgtggttgtttattggaataaaa |
51 |
Q |
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| T |
27435180 |
ttttataaaaaaaatcataatctattttgtgtttgcttattgtaataaaa |
27435229 |
T |
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