View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15517_low_12 (Length: 233)
Name: NF15517_low_12
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 5353094 - 5352894
Alignment:
| Q |
18 |
ttatgaaggtgttactttattagggtgccttgtgttggtcaaattagttgagtcagtaactgaaagacagtggtactttgaatcaaggagggcaggaatg |
117 |
Q |
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| T |
5353094 |
ttatgaaggtgttactttattagggtgccttgtgttggtcaaattagttgagtcagtaactgaaagacagtggtactttgaatcaaggagggcaggaatg |
5352995 |
T |
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| Q |
118 |
agaatgagatcctctttgatggttgcagtgtatgaaaagctattgaacctttcgagttttggaaggaaaaggcactcaaatggtgaaatcgtgactttca |
217 |
Q |
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| T |
5352994 |
agaatgagatcctctttaatggttgcagtgtatgaaaagctattgaacctttcgagttttggaaggaaaaggcactcaaatggtgaaatcgtgaatttca |
5352895 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
5352894 |
t |
5352894 |
T |
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