View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15517_low_13 (Length: 202)
Name: NF15517_low_13
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 35229574 - 35229385
Alignment:
| Q |
1 |
aggcatattggcaagcttacttcttaggtcgtccagcattttattggcttgctgtgatccaaaataaggttcagcatcatggtaattccataccagtgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35229574 |
aggcatattggcaagcttacttcttagatcgtccagcattttattggcttgctgtgatccaaaataaggttcagcatcatggtaattccataccaatgca |
35229475 |
T |
|
| Q |
101 |
ctgtctttttgctctataaatgagtaatctgtttcatcagtatatgatcgcatcactttttcagcgtcgcttttccaagcatattcttcg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
35229474 |
ctgtctttttgctctataaatgagtaatctgtttcatcagtatatgatcgcatcactttttcagtgtcgcttttccaagcataatcttcg |
35229385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University