View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15517_low_3 (Length: 617)
Name: NF15517_low_3
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Complemental strand, 3759054 - 3758443
Alignment:
| Q |
10 |
aagaatatacaagagaatgaaggagaagatgacaagatagcgctcccgaaaatgcgttcacttacgcttgaatctttaccttcccttgttagtctctctc |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3759054 |
aagaaaatacaagagaatgaaggagaagatgacaagatagcgctcccgaaattgcgttcacttacgcttgaatctttaccttcccttgttagtctctctc |
3758955 |
T |
|
| Q |
110 |
ctgagtcttgcaataaggatagtgaaaacaacaatgatttctccagtcaacttttgaatgataaggtacaagcatgacatattgctcttcaatatatttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3758954 |
ctgagtcttgcaataaggatagtgaaaacaacaatgatttctccagtcaacttttgaatgataaggtacaagcatgacatattgctcttcaatatatttt |
3758855 |
T |
|
| Q |
210 |
taatgaatgtaccaagttgttaaaactcattgaccatcctccgaacacaatttaaccaagattatgaactcattttcaggtgttcaaatatacatgattt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3758854 |
taatgaatgtaccaagttgttaaaactcattgaccatcctccgaacacaatttaaccaagattatgaactcattttcaggtgttcaaatatacatgattt |
3758755 |
T |
|
| Q |
310 |
ccaagtgttcaaaatcgtagttacttttgtttagtgcatgtttaatgagttacgaaa-------------------catccactgaatgtaattaaccac |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3758754 |
ccaagtgttcaaaatcgtagttacttttgtttagtgcatgtttaatgagttacgaaaccttgttatagtcattaaccatccactgaatgtaattaaccac |
3758655 |
T |
|
| Q |
391 |
atatttgaactgcgttagtcatctagttgaaacagatgtttcaccatctcatgcctttgttctctctaattcaccaactcaaaaatgtagtgacag-nnn |
489 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3758654 |
atatttgaactgcgttaatcatctagttgaaacagacgtttcaccatctcatgcctttgttctctctaattcaccaactcaaaaatgtagtgacagtttt |
3758555 |
T |
|
| Q |
490 |
nnnnngttagtgataatgaaactttcataactgttgacaggttgaatttccaagtttggagacattgaagctttactcaatcaatgtacagaggatatgg |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3758554 |
tttttgttagtgataatgaaactttcataactgttgacaggttgaatttccaagtttggagacattgaagctttactcaatcaatgtacagaggatatgg |
3758455 |
T |
|
| Q |
590 |
gatgacaaactt |
601 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3758454 |
gatgacaaactt |
3758443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 501 - 586
Target Start/End: Complemental strand, 6990456 - 6990371
Alignment:
| Q |
501 |
gataatgaaactttcataactgttgacaggttgaatttccaagtttggagacattgaagctttactcaatcaatgtacagaggata |
586 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||| || |||||| || ||||||||| |
|
|
| T |
6990456 |
gataatgaaactttcataactattgacaggttgaatttccaagtttggaggcattgcaactttcctgaatcaaagtccagaggata |
6990371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 42813504 - 42813468
Alignment:
| Q |
364 |
aaacatccactgaatgtaattaaccacatatttgaac |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42813504 |
aaacatccactaaatgtaattaaccacatatttgaac |
42813468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 15368090 - 15368130
Alignment:
| Q |
367 |
catccactgaatgtaattaaccacatatttgaactgcgtta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
15368090 |
catccactgaatgtaattaaccacatatttcaacagcgtta |
15368130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University