View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15517_low_4 (Length: 409)
Name: NF15517_low_4
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 30593594 - 30593925
Alignment:
| Q |
1 |
caacaacctccatgacttaaacgagtcgcttcaaactgaaagaaactagagacagattgttcgttcctgcgtgcgtaagttattattttgttccggatat |
100 |
Q |
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| T |
30593594 |
caacaacctccatgacttaaacgagtcgcttcaaactgaaagaaactagagacagattgttcgttcctgcgtgcgtaag---ttattttgttccggatat |
30593690 |
T |
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| Q |
101 |
ggttgttagtggttacgcggtctaagg--------ttgtcttatgaaattgggttttgctaattctcaattaacaaattatttattggaaattttaatac |
192 |
Q |
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| T |
30593691 |
ggttgttagtggttacgcggtctaaggttgtctacttgtcttgtgaaattgggttttgctaattctcaattaacaaattatttattggaaattttaatac |
30593790 |
T |
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| Q |
193 |
ttgatgcattcaaggcacaatttctatnnnnnnnnttactttttaaagtctttaaaaaatatctttgaggcatttattaatattcttcattgaaattaca |
292 |
Q |
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| T |
30593791 |
ttgatgcattcaaggcacaatttctat-aaaaaaattactttttaaagtctttaaaaaatatc--tgatgcatttattaatatttttcattgaaattaca |
30593887 |
T |
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| Q |
293 |
atgactttacgactagaaatttaaattttaggtcatgc |
330 |
Q |
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| T |
30593888 |
atgactttacgactagaaatttaaattttgggtcatgc |
30593925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 30593982 - 30594019
Alignment:
| Q |
372 |
aaaccataatagacagatacaatactctttaaaatgtt |
409 |
Q |
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| T |
30593982 |
aaaccataatagacagatacaatactctttaaaatgtt |
30594019 |
T |
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