View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15517_low_6 (Length: 353)
Name: NF15517_low_6
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 40403353 - 40403084
Alignment:
| Q |
18 |
attactagttacaatacacaaaattacgttgggcccaccaatcttctttcttatgtgtcacccaccaagtggtttaaagccatacagctcatacaaggtg |
117 |
Q |
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| T |
40403353 |
attactagttacaatacacaaaattacgttgggcccaccaatcttctttcttatgtgtcacccaccaagtggtttaaagccttacagctcatacaaggtg |
40403254 |
T |
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| Q |
118 |
ctaatacacttgtgtaaccaattccattgcctccttcctattccaaagggtcagggtgctcttgtgactcctctaactctcctatacggannnnnnnacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40403253 |
ctaatacacttgtgtaaccaattccattgcctccttcctattccaaagggtcagggtgctcttgtgactcctctaactctcctatacggatttttttacc |
40403154 |
T |
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| Q |
218 |
ttaaaaatgttacggtggttacctcgatatccattttggcatcatatacacctttttctatattcatctc |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40403153 |
ttaaaaatgttacggtggttacctcgatatccattttggcatcatatacacctttttctatattcttctc |
40403084 |
T |
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