View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15517_low_9 (Length: 304)
Name: NF15517_low_9
Description: NF15517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15517_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 20069382 - 20069112
Alignment:
| Q |
18 |
atttaagaggattaactctaggctgattgggttccaattatcttcctcaaagagaaacaagctcacaccgaaaacttagaaaaagagctcgaagagttgt |
117 |
Q |
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| T |
20069382 |
atttaagaggattaactctacgctgattgggttccaattatcctcctcaaagagaaacaagctcacaccgaaatcttagaaaaagagctcgaagagttgt |
20069283 |
T |
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| Q |
118 |
ttgggtactattagttataggtgttaagttttttctttctatataggtttgtataagagaagaaaaatgttaacgagtgcctgaaacattgtttaagagc |
217 |
Q |
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| T |
20069282 |
ttgggtaccattagttataggttagaagttttttctttctttataagtttatataaaagaagagaaatgttaacgagtgtccgagacattttttaaaagc |
20069183 |
T |
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| Q |
218 |
tttaaaagccaaatggaaacatggtatatgatttggcaatgttgttgttgcgtccaagtcatttaaatggt |
288 |
Q |
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| T |
20069182 |
tttaaaagccaagtggaaacatgagatatgatttggcaatgtctttgttgcgtctaggtcatttaaatggt |
20069112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 20085694 - 20085441
Alignment:
| Q |
43 |
attgggttccaattatcttcctcaaagagaaacaagctcacaccgaaaacttagaaaaagagctcgaagagttgtttgggtactattagttataggtgtt |
142 |
Q |
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| T |
20085694 |
attgtgttcgaattatcatcctcaaagtgaaacaagctcacaccaaaatcttggataaagagctcgaagagttggttgggtactattagttatgggtcag |
20085595 |
T |
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| Q |
143 |
aagttttttctttctatataggtttgt---------ataagagaagaaaaatgttaacgagtgcctgaaacattgtttaagagctttaaaagccaaatgg |
233 |
Q |
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| T |
20085594 |
aagttttttctttctttctaggtttgttgttagttgataaaggaagacaaattttaacgagtgtctg---cgtattttaagagctttaaaagccaagtga |
20085498 |
T |
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| Q |
234 |
aaacatggtatatgatttggcaatgttgttgttgcgtccaagtcatttaaatggtcc |
290 |
Q |
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| T |
20085497 |
aaacataagatatgatttggcaatgttgttgtggcgtccaggtcattaaaatggtcc |
20085441 |
T |
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