View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15518_high_10 (Length: 227)
Name: NF15518_high_10
Description: NF15518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15518_high_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41926752 - 41926978
Alignment:
| Q |
1 |
actatacattctaattgactaggtatttcattctttcaaaactctggagcctcaccagttctctgcttgccgtgacctatatacttttgcttgcaccgta |
100 |
Q |
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| T |
41926752 |
actatacattctaattgactaggtatttcattctttcaaaactctggagcctcaccggttctctgcttgcagtgacctatgtacttttgcttgcaccgta |
41926851 |
T |
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| Q |
101 |
caaaatgaagcttgtgcctgtctttaaactatatataggcagttctccttgggaactcttgtttaaacaagtgttatttgctgccttagacatcttagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41926852 |
caaaatgaagcttgtgcctgtctttaaactatatataggcagttctccttgggagctcttgtttaaacaagtgttatttgctgccttagacatcttagtt |
41926951 |
T |
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| Q |
201 |
taactggttccgcatcatggaagattt |
227 |
Q |
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| T |
41926952 |
taactggttccgcatcatggaagattt |
41926978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36122531 - 36122302
Alignment:
| Q |
1 |
actatacattctaattgactaggtatttcattctttcaaaactctggagcct-caccagttctctgcttgccgtgacctatatacttttgcttgcaccgt |
99 |
Q |
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|||||||||||||||| || || ||||| | ||| ||||| |||||||| | | || || || || |||| |||||||||| | | |||||| |||| |
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| T |
36122531 |
actatacattctaattaaccagctattttaaacttccaaaattctggagctttctcctgtcctttgtttgcagtgacctataaattattgcttatcccgt |
36122432 |
T |
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| Q |
100 |
acaaaatgaagcttgtgcctgtctttaaactatatataggcagttctccttgggaactcttgtttaaacaagtgttatttgctgccttag--acatctta |
197 |
Q |
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| T |
36122431 |
acaagatgaaacccgtgcccgtctttaaactatatataggccgaactcctggggagctcttatttaaacaagtgttattttctgccttagacacatcttc |
36122332 |
T |
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| Q |
198 |
gtttaactggttccgcatcatggaagattt |
227 |
Q |
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| T |
36122331 |
atttaactggttcctcatcatggaagattt |
36122302 |
T |
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