View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15518_low_1 (Length: 683)
Name: NF15518_low_1
Description: NF15518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15518_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 43090521 - 43090992
Alignment:
| Q |
1 |
tatataatgtatagagtgtgacattgcattgtggggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaaca |
100 |
Q |
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| T |
43090521 |
tatataatatatagagtgtgacattgcattgtggggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaaca |
43090620 |
T |
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| Q |
101 |
aatagaannnnnnnatgtagtaaaaaagaatcaccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaa |
200 |
Q |
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| T |
43090621 |
aatagaattttt--atgtagtaaaaaagaaacaccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaa |
43090718 |
T |
|
| Q |
201 |
gtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcatt |
300 |
Q |
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| T |
43090719 |
gtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcatt |
43090818 |
T |
|
| Q |
301 |
catctgtccctccctatgagcgacttgtccttaaaaaagatagatac-----ttcagtgtcctaaaatatctgacacactcttgaatgcattcctagtta |
395 |
Q |
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| T |
43090819 |
catctgtccctccctatgagcgacttgtccttaaaaaagatagatacttcagttcagtgtcctaaaatatctgacacactcttgaatgcattcctagtta |
43090918 |
T |
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| Q |
396 |
atcttcccttcccttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
469 |
Q |
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| T |
43090919 |
atcttcccatcccttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
43090992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 470 - 664
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
470 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
569 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
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| Q |
570 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
664 |
Q |
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| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
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