View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15518_low_11 (Length: 240)
Name: NF15518_low_11
Description: NF15518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15518_low_11 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 3710189 - 3710421
Alignment:
| Q |
9 |
ctcatgtcatcaaaagcttgcaagaatgttaaactat--catactaattaattccctatctctaggaaaattaccttagcaaataatatatctagattat |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3710189 |
ctcatgtcatcaaaagcttggaagaatgttaaactatgtcatactaattaattccctatctctaggaaaattaccttagcaaataatatatctagattat |
3710288 |
T |
|
| Q |
107 |
gtcacgtggtccattttaaaactcannnnnnncgtctttcaatatgtgcggggatcgtggttgcatgcatggggtgcattggacaatgactattttcctt |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
3710289 |
gtcacgtggtccattttaaaactca-ttttttcgtctttcaatatgtgcggggatcgtgattgcattcatggggtgcattggagaatggctattttcctc |
3710387 |
T |
|
| Q |
207 |
gttttcttcattatttatgtgcttttcgcctttg |
240 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
3710388 |
atttccttcattatttatgtgcttttcgcctttg |
3710421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 9848595 - 9848623
Alignment:
| Q |
75 |
aattaccttagcaaataatatatctagat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9848595 |
aattaccttagcaaataatatatctagat |
9848623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University