View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15518_low_2 (Length: 651)

Name: NF15518_low_2
Description: NF15518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15518_low_2
NF15518_low_2
[»] chr5 (5 HSPs)
chr5 (76-651)||(33811292-33811866)
chr5 (76-651)||(33816210-33816784)
chr5 (76-651)||(33807638-33808212)
chr5 (1-75)||(13868169-13868242)
chr5 (602-651)||(16698620-16698669)
[»] chr3 (10 HSPs)
chr3 (259-651)||(50603003-50603402)
chr3 (403-651)||(54967211-54967477)
chr3 (456-651)||(44782525-44782733)
chr3 (397-501)||(31725346-31725448)
chr3 (403-569)||(39298736-39298908)
chr3 (456-571)||(18556392-18556511)
chr3 (456-640)||(54979854-54980051)
chr3 (605-651)||(17645933-17645980)
chr3 (545-573)||(17645869-17645897)
chr3 (588-651)||(31725199-31725262)
[»] chr6 (4 HSPs)
chr6 (281-651)||(31151927-31152298)
chr6 (456-651)||(22981504-22981709)
chr6 (456-651)||(23806699-23806904)
chr6 (394-576)||(1111378-1111564)
[»] chr1 (1 HSPs)
chr1 (438-651)||(29706855-29707069)
[»] scaffold0045 (1 HSPs)
scaffold0045 (403-636)||(26514-26752)
[»] chr8 (5 HSPs)
chr8 (403-651)||(41481548-41481814)
chr8 (403-651)||(36167547-36167812)
chr8 (602-647)||(18951129-18951174)
chr8 (459-573)||(18951207-18951326)
chr8 (606-651)||(18116885-18116930)
[»] chr7 (10 HSPs)
chr7 (456-651)||(4842649-4842857)
chr7 (403-651)||(25857132-25857395)
chr7 (403-651)||(4835576-4835840)
chr7 (456-571)||(13465046-13465165)
chr7 (393-526)||(8252716-8252853)
chr7 (602-651)||(24380113-24380162)
chr7 (475-569)||(27341025-27341120)
chr7 (458-578)||(17845847-17845969)
chr7 (456-569)||(24379370-24379487)
chr7 (582-651)||(24379280-24379347)
[»] scaffold0479 (1 HSPs)
scaffold0479 (456-651)||(2727-2935)
[»] chr4 (3 HSPs)
chr4 (403-651)||(9757213-9757480)
chr4 (475-571)||(37286972-37287069)
chr4 (458-569)||(42682924-42683038)
[»] scaffold0003 (2 HSPs)
scaffold0003 (602-651)||(342218-342267)
scaffold0003 (475-569)||(342306-342404)
[»] chr2 (2 HSPs)
chr2 (475-567)||(37037942-37038035)
chr2 (602-638)||(37038076-37038112)


Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 76 - 651
Target Start/End: Original strand, 33811292 - 33811866
Alignment:
Q  76 tgttggtttccagccacaatggtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 175  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811292 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 33811391  T
Q  176 attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 275  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811392 attctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 33811491  T
Q  276 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811492 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 33811591  T
Q  376 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811592 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 33811691  T
Q  476 tgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgtt 574  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  33811692 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt- 33811790  T
Q  575 gtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811791 -tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 33811866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 76 - 651
Target Start/End: Original strand, 33816210 - 33816784
Alignment:
Q  76 tgttggtttccagccacaatggtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 175  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816210 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 33816309  T
Q  176 attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 275  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816310 attctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 33816409  T
Q  276 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816410 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 33816509  T
Q  376 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816510 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 33816609  T
Q  476 tgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgtt 574  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  33816610 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt- 33816708  T
Q  575 gtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816709 -tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 33816784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 76 - 651
Target Start/End: Original strand, 33807638 - 33808212
Alignment:
Q  76 tgttggtttccagccacaatggtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 175  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807638 tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa 33807737  T
Q  176 attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807738 attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg 33807837  T
Q  276 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807838 cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag 33807937  T
Q  376 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807938 ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt 33808037  T
Q  476 tgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgtt 574  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  33808038 tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt- 33808136  T
Q  575 gtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808137 -tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 33808212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13868242 - 13868169
Alignment:
Q  1 aatctaccccaacgccaaaccttaaattcccttccaatgcgaaaaagcacaatgagttttaacggaagcataaac 75  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13868242 aatcaaccccaacgccaaaccttaaattcccttccaatgcg-aaaagcacaatgagttttaacggaagcataaac 13868169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 651
Target Start/End: Original strand, 16698620 - 16698669
Alignment:
Q  602 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    |||||||| ||||||||||||||| ||||||||||||   ||||||||||    
T  16698620 tgcctattctgagttcacggaggatggaaattatgcatatatttcccaac 16698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 259 - 651
Target Start/End: Original strand, 50603003 - 50603402
Alignment:
Q  259 gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatg-aaacacaccacaaca-----caatcctcactcacat 352  Q
    ||||||||||||||||||  ||||||||   | ||||||||||||||||||| |||||||| | |||||||||||||||     |||||||||||||||     
T  50603003 gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacatagcacaatcctcactcacac 50603102  T
Q  353 agagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatag 450  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  50603103 agagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatag 50603200  T
Q  451 ttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgaga 549  Q
    ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||    
T  50603201 ttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgaga 50603300  T
Q  550 aggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttccca 649  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||||| | | |||||||||||    
T  50603301 aggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttccca 50603400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 403 - 651
Target Start/End: Complemental strand, 54967477 - 54967211
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 496  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  497 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtcatt-------- 584  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| || |||||||||||||||||||||||| | || |||||||||            
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt 54967279  T
Q  585 ---ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
       | ||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54967278 atttcacgtttccgctag--tgcctattttgagttgacggaggagggaaattatgcaggcatttcccaac 54967211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 456 - 651
Target Start/End: Complemental strand, 44782733 - 44782525
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacat-gagaa 550  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| || |||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  551 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 639  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||   || |||||||||||||||||||||||||||||||||||    
T  44782633 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgctag--tgtctattttgagttcacggaggagggaaattatgcag 44782537  T
Q  640 gcatttcccaac 651  Q
    ||||||||||||    
T  44782536 gcatttcccaac 44782525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 397 - 501
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
Q  397 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata 496  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  497 gtgga 501  Q
     ||||    
T  31725350 ttgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 403 - 569
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 496  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  497 gtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaatt 569  Q
    |||||  ||||||||||  | |||||||||| |||||||||  ||||| |||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacat-gagaag 551  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| || ||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  552 gttttccacgctaaaatttt 571  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 640
Target Start/End: Complemental strand, 54980051 - 54979854
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga--gatttaagaggcttacgggtcccgtggttttt-ccttactcaca-tgagaa 550  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||    ||||||||||  | |||||||||||||||| |||| |||| | ||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  551 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 639  Q
    ||||||||| ||||||||| | || ||||||           |||| |||||||||||  | ||| ||||||||||| ||||||||||||||||||||||    
T  54979951 ggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgtttccgct--agtgcttattttgagttgacggaggagggaaattatgcag 54979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 605 - 651
Target Start/End: Original strand, 17645933 - 17645980
Alignment:
Q  605 ctattttgagttcacggaggagggaaattatgcagg-catttcccaac 651  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  17645933 ctattttgagttcacggatgagggaaattatggaggtcatttcccaac 17645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 573
Target Start/End: Original strand, 17645869 - 17645897
Alignment:
Q  545 tgagaaggttttccacgctaaaattttgt 573  Q
    |||||||||||||||||||||||||||||    
T  17645869 tgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 651
Target Start/End: Complemental strand, 31725262 - 31725199
Alignment:
Q  588 cgtttccgctaaattgcctatttt-gagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    |||||||||||||| ||||||||| || ||||||||| |||  |||||||||| |||||||||||    
T  31725262 cgtttccgctaaat-gcctatttttgaattcacggagaaggtgaattatgcagacatttcccaac 31725199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 281 - 651
Target Start/End: Complemental strand, 31152298 - 31151927
Alignment:
Q  281 ggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcc 379  Q
    |||||||| | ||||||||||||||||||| |||||||| | || |||||||||||||||  | || ||     ||||||||||||||||||||||||||    
T  31152298 ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaacacaa--cacaatcctcgggagttgagagaaaaatagagagttcc 31152201  T
Q  380 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 479  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||    
T  31152200 tcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgta 31152101  T
Q  480 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcaca-tgagaaggttttccacgctaaaattttgttgtg 577  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||| ||||||||||||||||  |||||||||||||||    
T  31152100 ttcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtg 31152001  T
Q  578 tgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    |||||||||| |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  31152000 tgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaac 31151927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 456 - 651
Target Start/End: Original strand, 22981504 - 22981709
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacat-gagaag 551  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||| ||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  552 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggca 642  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  | ||||| ||||||||||||||||| |||||||||||||| ||    
T  22981604 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 22981700  T
Q  643 tttcccaac 651  Q
    |||||||||    
T  22981701 tttcccaac 22981709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 456 - 651
Target Start/End: Complemental strand, 23806904 - 23806699
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacat-gagaag 551  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||| ||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  552 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggca 642  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  | ||||| ||||||||||||||||| |||||||||||||| ||    
T  23806804 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 23806708  T
Q  643 tttcccaac 651  Q
    |||||||||    
T  23806707 tttcccaac 23806699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 394 - 576
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  394 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta 491  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  492 tta-tagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaattttgttgt 576  Q
    ||| ||  | ||||||||||| |||| | ||||| || |||||||||| | ||| | ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 438 - 651
Target Start/End: Complemental strand, 29707069 - 29706855
Alignment:
Q  438 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 537  Q
    |||||||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  538 actcaca-tgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatg 636  Q
    ||||| | |||||||||||||| | ||||||||||||||||||||||||||| |||  |||||| ||| |||||| |||||||||| ||| |||||||||    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  637 caggcatttcccaac 651  Q
     |||||||| |||||    
T  29706869 gaggcattttccaac 29706855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 403 - 636
Target Start/End: Complemental strand, 26752 - 26514
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata 496  Q
    |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |||| |    
T  26752 atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga 26653  T
Q  497 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg 595  Q
    |||||  ||||||||||  | ||||||||| |||||||||||||||||| || |||||||||||| |||||||||||||||||   ||||||||||| ||    
T  26652 gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgttgtgtt--attttacgttttcg 26555  T
Q  596 ctaaattgcctattttgagttcacggaggagggaaattatg 636  Q
    ||||| || |||||||||||||||| |||||||| ||||||    
T  26554 ctaaagtgtctattttgagttcacgaaggagggagattatg 26514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 403 - 651
Target Start/End: Original strand, 41481548 - 41481814
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 496  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  497 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtc----------- 581  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| || |||||||||||||||||||||||| | || ||||||               
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 41481746  T
Q  582 attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    |||| |||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||||||    
T  41481747 atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaac 41481814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 403 - 651
Target Start/End: Original strand, 36167547 - 36167812
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 496  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  497 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacat-gagaaggttttccacgctaaaattttgttgtgtgtcatt-------- 584  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| || |||||||||||||||||||||||| | || |||||||||            
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 36167744  T
Q  585 ---ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
       | ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36167745 atttcacgtttccgctag--tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 36167812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 18951174 - 18951129
Alignment:
Q  602 tgcctattttgagttcacggaggagggaaattatgcaggcatttcc 647  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  18951174 tgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 573
Target Start/End: Complemental strand, 18951326 - 18951207
Alignment:
Q  459 acctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttttt--ccttactcaca-tgagaaggt 553  Q
    |||| ||||||||| | ||||||||||||||| |||||||||| || ||||||| ||  |  |||| ||||||||||  |||| |||||| |||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  554 tttccacgctaaaattttgt 573  Q
    |||||| ||||||||| |||    
T  18951226 tttccatgctaaaattctgt 18951207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 651
Target Start/End: Complemental strand, 18116930 - 18116885
Alignment:
Q  606 tattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    |||||| ||||||| || |||| |||||||||||||||||||||||    
T  18116930 tattttaagttcacagacgaggtaaattatgcaggcatttcccaac 18116885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 456 - 651
Target Start/End: Complemental strand, 4842857 - 4842649
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacat-gagaa 550  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| ||||||| |||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  551 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 639  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  4842757 ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgctag--tgcctattttgagttcacggaggagggaaattatgcag 4842661  T
Q  640 gcatttcccaac 651  Q
    ||||||||||||    
T  4842660 gcatttcccaac 4842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 403 - 651
Target Start/End: Complemental strand, 25857395 - 25857132
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 496  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  497 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacat-gagaaggttttccacgctaaaattttgttgtgtgtc-----------a 582  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    | ||||||           |    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata 25857199  T
Q  583 ttttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    ||| |||||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25857198 tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaac 25857132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 403 - 651
Target Start/End: Complemental strand, 4835840 - 4835576
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 496  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  497 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacat-gagaaggttttccacgctaaaattttgt-tgt------gtgt-catt 584  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| ||||||| |||||||||||||||||||||||| | | |||      || |  |||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt 4835641  T
Q  585 ttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    | |||||||| ||  | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4835640 tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaac 4835576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacat-gagaag 551  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||| ||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  552 gttttccacgctaaaatttt 571  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 393 - 526
Target Start/End: Complemental strand, 8252853 - 8252716
Alignment:
Q  393 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta 488  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta 8252754  T
Q  489 ttattatagtggagatttaagaggcttacgggtcccgt 526  Q
    |||||| | ||  || ||||||| |||||| |||||||    
T  8252753 ttattacattgaggagttaagagacttacgagtcccgt 8252716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 602 - 651
Target Start/End: Original strand, 24380113 - 24380162
Alignment:
Q  602 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaac 24380162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 569
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  475 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacat-gagaaggttttccacgctaaaatt 569  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 578
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
Q  458 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttt 555  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| |||||| || ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  556 tccacgctaaaattttgttgtgt 578  Q
    ||||| |||||||| | ||||||    
T  17845947 tccactctaaaattctcttgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 569
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacat-gagaag 551  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || ||||||| ||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  552 gttttccacgctaaaatt 569  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 651
Target Start/End: Complemental strand, 24379347 - 24379280
Alignment:
Q  582 attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    ||||||||||||| |||   |||||||||| |||||||||||||| ||||||||| || ||||| |||||    
T  24379347 attttacgtttccactag--tgcctattttaagttcacggaggagagaaattatgtagacattttccaac 24379280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 456 - 651
Target Start/End: Original strand, 2727 - 2935
Alignment:
Q  456 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacat-gagaa 550  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| ||||||| |||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  551 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcag 639  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  | || ||||||||||||||||||| ||||||||||||||     
T  2827 ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat 2923  T
Q  640 gcatttcccaac 651  Q
    ||||||||||||    
T  2924 gcatttcccaac 2935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 403 - 651
Target Start/End: Complemental strand, 9757480 - 9757213
Alignment:
Q  403 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 496  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  497 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcaca-tgagaaggttttccacgctaaaattttgttgtgtgtc---------- 581  Q
    |||||     ||||||||||  | |||||||||||||||| |||| |||||| ||||||||||||||||||||||||| | || ||||||              
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta 9757282  T
Q  582 -attttacgtttccgctaaattgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
     |||| |||||||||||  | |||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  9757281 tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaac 9757213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 475 - 571
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  475 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaatttt 571  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||| ||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  458 cacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggtt 554  Q
    ||||| ||||||||| | ||||||||||||||| |||||||||| || |||||||||   | |||||||||| ||||||||| |||||| ||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  555 ttccacgctaaaatt 569  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 651
Target Start/End: Complemental strand, 342267 - 342218
Alignment:
Q  602 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaac 651  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  342267 tgcctattttgagttcacggaggaggaaaattatgcaggcattttccaac 342218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 569
Target Start/End: Complemental strand, 342404 - 342306
Alignment:
Q  475 ttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggttt-ttcc-ttactcaca-tgagaaggttttccacgctaaaatt 569  Q
    ||||||||||||||| |||||||||| || ||||||||||  | || ||||||||||| |||| || |||| | |||||||||||| ||||||||||||    
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaatt 342306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 567
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  475 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcaca-tgagaaggttttccacgctaaaa 567  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| |||||| |||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 638
Target Start/End: Original strand, 37038076 - 37038112
Alignment:
Q  602 tgcctattttgagttcacggaggagggaaattatgca 638  Q
    ||||||||||||||||||||||||| |||||||||||    
T  37038076 tgcctattttgagttcacggaggagagaaattatgca 37038112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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