View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15518_low_5 (Length: 458)
Name: NF15518_low_5
Description: NF15518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15518_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 49297384 - 49296932
Alignment:
| Q |
1 |
tcataatgcaaaaaggttgtaacttgtggaaccatgtagtatt-----taatttattatcaatacttataaaaaagataacattacatttaacccttaaa |
95 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297384 |
tcataatgcaaaaaggtagtaacttgtggaaccatgtagtattccctttaatttattatcaatacttataaaaaagataacattacatttaacccttaaa |
49297285 |
T |
|
| Q |
96 |
aaagaaggctaaacaatatacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaatta |
195 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297284 |
aaagaaggctaaacaatagacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaatta |
49297185 |
T |
|
| Q |
196 |
agttagactaattaattatacctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaaggtcaacttattatta |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49297184 |
agttagactaattaattatacctagtgccataatctctaagattaactcaacattgcctctctatat-atatataaccaaaaaaggtcaacttattatta |
49297086 |
T |
|
| Q |
296 |
ttaagtagatttgtgtgagc---ctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataa |
392 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297085 |
ttaagtagatttgtgtgagcctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataa |
49296986 |
T |
|
| Q |
393 |
cttgattggctccaccaacaagctcaccaccaatgaaaacagttggaactgatg |
446 |
Q |
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| T |
49296985 |
cttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatg |
49296932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Complemental strand, 49290424 - 49289981
Alignment:
| Q |
10 |
aaaaaggttgtaacttgtggaaccatgtagtatt-----taatttattatcaatacttataaaaaagataacattacatttaacccttaaaaaagaaggc |
104 |
Q |
| |
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||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290424 |
aaaaatgtagtaacttgtggaaccatgtagtattccctttaatttattatcaatacttataaaaaagataacattacatttaacccttaaaaaagaaggc |
49290325 |
T |
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| Q |
105 |
taaacaatatacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
204 |
Q |
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| T |
49290324 |
taaacaatagacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
49290225 |
T |
|
| Q |
205 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaaggtcaacttattattattaagtaga |
304 |
Q |
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| T |
49290224 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctctat-atatataaccaaaaaaggtcaacttattattattaagtaga |
49290126 |
T |
|
| Q |
305 |
tttgtgtgagc---ctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattgg |
401 |
Q |
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| T |
49290125 |
tttgtgtgagcctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattgg |
49290026 |
T |
|
| Q |
402 |
ctccaccaacaagctcaccaccaatgaaaacagttggaactgatg |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49290025 |
ctccaccaacaagctcaccaccaatgaaaacagttggaacagatg |
49289981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 320 - 446
Target Start/End: Complemental strand, 49303788 - 49303662
Alignment:
| Q |
320 |
tgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303788 |
tgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcac |
49303689 |
T |
|
| Q |
420 |
caccaatgaaaacagttggaactgatg |
446 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
49303688 |
caccaatgaaaacagttggaacagatg |
49303662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 49304022 - 49303986
Alignment:
| Q |
74 |
aacattacatttaacccttaaaaaagaaggctaaaca |
110 |
Q |
| |
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| T |
49304022 |
aacattacatttaaccccgaaaaaagaaggctaaaca |
49303986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 6567878 - 6567938
Alignment:
| Q |
374 |
ttaagatgaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacag |
434 |
Q |
| |
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||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
6567878 |
ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacag |
6567938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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