View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15519_high_2 (Length: 529)
Name: NF15519_high_2
Description: NF15519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15519_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 40895816 - 40895326
Alignment:
| Q |
19 |
attttcaaaccatgaaaatacatctttcttcataagagaaatataaagtttattttgcgatcaaagtaaatgagttaaagagttaatcaagcataaatca |
118 |
Q |
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| T |
40895816 |
atttccaaaccatgaaaatacaactttcttcataagagaaatataaagtttattttgcgatcaaagtaaatgagttaaagagttaatcaagcataaataa |
40895717 |
T |
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| Q |
119 |
tttggaaggatcaatccctacctacaagataacacttatactaacatttgtggtgaacaaaaacccttcataaacccataacaagtttgataatgagtaa |
218 |
Q |
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| T |
40895716 |
tttggaaggatcaatccctacctacaagataacacttatactaacatttgtggtgaacaaaaacccttcataaacccataacaagtttgataatgagtaa |
40895617 |
T |
|
| Q |
219 |
cctttcctctttgtatttgcaaggtatatcgatttttctaagtttacttggaatattaacttttgcttgtattgtaccgtatccccagatctatgaaaat |
318 |
Q |
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| T |
40895616 |
ccttttctctttgtatttgcaaggtatatcgatttttctaagtttacttggaatattaacttttgcttgtattgtaccgtatccccagatctatgaaaat |
40895517 |
T |
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| Q |
319 |
aaaagtttatcactttttctttaagggtttgactttccattttatttttagttagaggattaagatactgcaatgattaatataaacatatataggggtc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40895516 |
aaaagtttatcactttttctttaagggtttgactttccattttatttttagttagaggattaagatactgcaatgattaatataaacatatataggggtc |
40895417 |
T |
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| Q |
419 |
atactactgacctacaaactagaactagaaagaagtttgtgctgaagctttaggatcggcactgaacatcaagtaggtgatattgtagcatg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40895416 |
atactactgacctacaaactagaactagaaagaagtttgtgctgaagc-ttaggatcggcactgaacatcaagtaggtgatattgtagcatg |
40895326 |
T |
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