View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15519_high_3 (Length: 412)
Name: NF15519_high_3
Description: NF15519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15519_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 24926690 - 24927072
Alignment:
| Q |
20 |
gagctgtcaaggaaggccttgaagtaggtgttgaggccctcgaagcgggtctagtgggagttgatgatctcactggtggagctgtagacttcgtagaagt |
119 |
Q |
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| T |
24926690 |
gagctgtcaaggaaggccttgaagtaggtgttgaggccctcgaagtgggtctagtgggagttgatgatctcactggtggagctgtagacttcgtagaagt |
24926789 |
T |
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| Q |
120 |
taatgtggcccgcgaggtaggcgtagagggcctcgaggatttctttgttgaaggtaatgttggccttccagatggagttgaagatcttgaagtagctgga |
219 |
Q |
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| T |
24926790 |
taatgtggcccgcgaggtaggcgtagagggcctcgaggatttcgttgttgaaggtaatgttggccttccagatggagttgaagatcttgaagtagctgga |
24926889 |
T |
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| Q |
220 |
gatggaccccttgacgaagaaatcctcttactgccattagtggaagaaccaaaacttgacattgatgcatgatgcttagaaactacattgcttcttgaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24926890 |
gatggaccccttgacgaagaaatcctcttactgccattagtggaagaaccaaaacttgacattgatgcatgatgcttagaaactacattgcttcttgaac |
24926989 |
T |
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| Q |
320 |
taggttctatttggatattatctacctgcaacacaagaaaggtgtatgtgtcgaatgaattaaatcaactaaaaaacccataat |
403 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24926990 |
taggttctatttggatattatctacctgcaacacaag-aaggtgtatgtgtcgaatgaattaaatcaactaaaaaacacataat |
24927072 |
T |
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