View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15519_high_4 (Length: 397)
Name: NF15519_high_4
Description: NF15519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15519_high_4 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 34208261 - 34207874
Alignment:
| Q |
10 |
attatacttacatatccaagaaggtcaagatcatgatggtcactatattccctgttcttttttccagttattgtctctagtataataacaccgaaactaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34208261 |
attatacttacatatccaagaaggtcaagatcatgatggtcactatattccctgttcttttttccagttattgtctctagtataataacaccgaaactaa |
34208162 |
T |
|
| Q |
110 |
agacatctgatttcacggagaaaaatccacgtgctgcatactctggagatatgtaaccactgnnnnnnntaataaagaaagaaatgataccgggcttagg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
34208161 |
agacatctgatttcacggagaaaaatccacgtgctgcatactctggagatatgtaaccactgaaaaaaataataaagaaagaaaagataccgggcttagg |
34208062 |
T |
|
| Q |
210 |
aaaaggagcaggagaatatttatgtttcataaagcaaaaaattcaagtagtttaagcatgcttactgagttcctactactctaattgtttcgacttcagc |
309 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34208061 |
aaaaggagcagcagaatatttatgtttcataaagcaaaaaattcaagtagtttaagcatgcttactgagttcctactactctaattgtttcgacttcagc |
34207962 |
T |
|
| Q |
310 |
ttcatctccccataatgttctagcaagaccgaagtctgagattttaggattcatatttttgtctagaagaatattgctggtcttgaga |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34207961 |
ttcatctccccataatgttctagcaagaccgaagtctgatattttaggattcatatttttgtctagaagaatattgctggtcttgaga |
34207874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 34219412 - 34219024
Alignment:
| Q |
15 |
acttacatatccaagaaggtcaagatcatgatggtcactatattccctgttcttttttccagttattgtctctagtataataacaccgaaactaaagaca |
114 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| ||||| ||||||||||||||| |||||| | ||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
34219412 |
acttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagaca |
34219313 |
T |
|
| Q |
115 |
tctgatttcacggagaaaaatccacgtgctgcatactctggagatatgtaaccactgnnnnnnntaataaagaaa--------gaaatgataccgggctt |
206 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||| |
|
|
| T |
34219312 |
tcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactgaaacaaataataaagaaaaaaagacggaacagatacggggctt |
34219213 |
T |
|
| Q |
207 |
aggaaaaggagcaggagaatatttatgtttcataaagcaaaaaattcaagtagtttaagcatgcttactgagttcctactactctaattgtttcgacttc |
306 |
Q |
| |
|
||||||| ||| | | |||||||||| || || |||||| ||||| |||| || ||| ||||||||| ||||||||||||||| ||||| | ||| |
|
|
| T |
34219212 |
aggaaaa-gagta-gtgaatatttataatttatgaagcaacaaattaaagtcattgaagtatgcttactaagttcctactactcttcttgttaccccttt |
34219115 |
T |
|
| Q |
307 |
agcttcatctccccataatgttctagcaagaccgaagtctgagattttaggattcatatttttgtctagaagaatattgctggtcttgaga |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
34219114 |
tgcttcatctccccataatgttctagcaagaccaaagtctgatattttaggaatcatattttcgtctagaagaatgttgctggtcttgaga |
34219024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 34192244 - 34192627
Alignment:
| Q |
15 |
acttacatatccaagaaggtcaagatcatgatggtcactatattccctgttcttttttccagttattgtctctagtataataacaccgaaactaaagaca |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||||| |||||||| |||||| |||||| | |||||||||||||||||||| || |||||||||||| |
|
|
| T |
34192244 |
acttacatatccaagaagatcaagatcatcatagtcacaatattcccggttcttgtttccactaattgtctctagtataataacgccaaaactaaagaca |
34192343 |
T |
|
| Q |
115 |
tctgatttcacggagaaaaatccacgtgctgcatactctggagatatgtaaccactgnnnnnnntaataaagaaagaaatgataccgggcttaggaaaag |
214 |
Q |
| |
|
|| |||||||| |||||||||||||||| || | |||||||| |||||||||||| | |||||||| ||| ||||| |||||||| |||| |
|
|
| T |
34192344 |
tcagatttcaccgagaaaaatccacgtgtcgcgaattctggagacatgtaaccactgaaacac--agtaaagaaaaaaaggatactgggcttag-aaaac |
34192440 |
T |
|
| Q |
215 |
gagcaggagaatatttatgtttcataaagcaaaaaattcaagt----agtttaagcatgcttactgagttcctactactctaattgtttcgacttcagct |
310 |
Q |
| |
|
| | |||||||||| || |||||| || ||||| |||| | ||||||||| |||||| ||||||||||| ||| ||||||| |||||||| |
|
|
| T |
34192441 |
atgatagtgaatatttatagtttataaagaaacaaattaaagtcatcaatttaagcatacttactaagttcctactattcttcttgtttctccttcagct |
34192540 |
T |
|
| Q |
311 |
tcatctccccataatgttctagcaagaccgaagtctgagattttaggattcatatttttgtctagaagaatattgctggtcttgaga |
397 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34192541 |
tcatctccccataatgttcgagcaagaccgaagtctgatattttaggattcatattttcgtctagaagaatattgctggtcttgaga |
34192627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University