View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15519_low_10 (Length: 267)
Name: NF15519_low_10
Description: NF15519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15519_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 24497922 - 24497678
Alignment:
| Q |
16 |
tttgaccaaagaaaacacaacatgcatccaccaaaaacacaaaaaatagcacaacagaagcgcttatccgcacaagtgaacaaaacaaaatcggaccgtc |
115 |
Q |
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| T |
24497922 |
tttgaccaaagaaaacacaacatgcatccaccaaaaacacaaaaaatagcacaacagaagcgcttatccgcacaagtgaacaaaacaaaatcggaccgtc |
24497823 |
T |
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| Q |
116 |
aaaatattgtttatcgacgttcactattcatttgggcaatacgcacggatcgagtgtttaaaccgtcgataatttcaaatccaacgacggaaaccaaaag |
215 |
Q |
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| T |
24497822 |
aaaatattgtttatcgacgttcactattcatttgggcaatacgcacggatcgagtgtttaaaccgtcgataatttcaaatccaacgacggaaaccaaaag |
24497723 |
T |
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| Q |
216 |
ttgaaaaactcatttgcttcttctacttcccgctctgaatctgtg |
260 |
Q |
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| T |
24497722 |
ttgaaaaactcatttgcttcttctacttcccgctctgaatctgtg |
24497678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 24924015 - 24923937
Alignment:
| Q |
126 |
ttatcgacgttcactattcatttgggcaatacgcacggatcgagtgtttaaaccgtcgataatttcaaatccaacgacg |
204 |
Q |
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| T |
24924015 |
ttatcgacgttcactattctttttctcaatacgcacggatcgctaatataaaccgtcgataacttaaaatccaacgacg |
24923937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 37937088 - 37937124
Alignment:
| Q |
219 |
aaaaactcatttgcttcttctacttcccgctctgaat |
255 |
Q |
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| T |
37937088 |
aaaaactcgtttgcctcttctacttcccgctctgaat |
37937124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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