View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15519_low_11 (Length: 258)

Name: NF15519_low_11
Description: NF15519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15519_low_11
NF15519_low_11
[»] chr3 (1 HSPs)
chr3 (1-243)||(24498150-24498392)
[»] chr2 (7 HSPs)
chr2 (95-166)||(28314692-28314762)
chr2 (102-193)||(37172627-37172718)
chr2 (95-163)||(7152080-7152148)
chr2 (95-138)||(15538948-15538991)
chr2 (113-219)||(28314587-28314693)
chr2 (185-230)||(14442018-14442063)
chr2 (102-132)||(23465780-23465810)
[»] chr1 (3 HSPs)
chr1 (119-212)||(17916109-17916202)
chr1 (140-224)||(40254547-40254631)
chr1 (117-231)||(31847317-31847431)
[»] chr4 (1 HSPs)
chr4 (102-230)||(5961701-5961828)
[»] chr8 (6 HSPs)
chr8 (95-132)||(38202009-38202046)
chr8 (102-192)||(30370078-30370168)
chr8 (95-135)||(38924415-38924455)
chr8 (95-149)||(33357382-33357436)
chr8 (95-132)||(9030608-9030645)
chr8 (95-139)||(33435428-33435472)
[»] chr7 (6 HSPs)
chr7 (116-161)||(48078636-48078681)
chr7 (95-161)||(5721673-5721739)
chr7 (102-212)||(22600588-22600693)
chr7 (137-182)||(38482333-38482378)
chr7 (103-147)||(11754722-11754766)
chr7 (102-134)||(16780798-16780830)
[»] chr6 (1 HSPs)
chr6 (114-230)||(32820709-32820825)
[»] scaffold0223 (1 HSPs)
scaffold0223 (95-132)||(16334-16371)
[»] scaffold0110 (1 HSPs)
scaffold0110 (152-230)||(31308-31386)
[»] chr5 (1 HSPs)
chr5 (184-230)||(896193-896239)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 24498150 - 24498392
Alignment:
Q  1 atatgttgaagagtgaaaatcgttctttggacatatctttaatattnnnnnnnttagaaagttccatttttaaatttgtgtcataacgagagttaaccga 100  Q
    ||||||| || |||||||||| ||||||||||||||||| ||||||       |||||||||||| |||||||||||||||||| |||||| ||||||||    
T  24498150 atatgttaaaaagtgaaaatcattctttggacatatcttaaatattaaaaaaattagaaagttccgtttttaaatttgtgtcatgacgagaattaaccga 24498249  T
Q  101 tttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24498250 tttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccaagcagaagttaactctagttgagttaagagaatga 24498349  T
Q  201 gtaattttgaaaggaagaatagtaattttcaaatgtcaaatat 243  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  24498350 gtaattttaaaaggaagaatagtaatttttaaatgtcaaatat 24498392  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 28314692 - 28314762
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccga 166  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||    
T  28314692 aaccaatttaaaaagtgattgaaccgatcttaaaagtgccaacgagacttaaccc-agctaaaaaataccga 28314762  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 37172627 - 37172718
Alignment:
Q  102 ttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaag 193  Q
    ||||||||| ||||||||||| ||||||||| ||| | |||||||| |||||| ||||||| ||||||| | |||||||||| |||||||||    
T  37172627 ttaaaaagtgattgaaccgatgttaaaagtgtcaatgggagttaactctagctaaaaaatatcgagcgggagttaactctagctgagttaag 37172718  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 7152148 - 7152080
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaatac 163  Q
    ||||| |||||||||||||||||||||| |||||||||  |||| |||||||| |  ||||||||||||    
T  7152148 aaccggtttaaaaagtaattgaaccgatattaaaagtgttaacgtgagttaactcacgctgaaaaatac 7152080  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 15538991 - 15538948
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtgccaacg 138  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  15538991 aaccgacttaaaaagtaattgaaccgatcttaaaagtgacaacg 15538948  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 28314693 - 28314587
Alignment:
Q  113 ttgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatgagtaattttgaaa 212  Q
    |||||||||||||||||||| || |  |||||||| |||| ||||||||||| |||   | |||||| ||  ||||||||  |||||| |||||||||||    
T  28314693 ttgaaccgatcttaaaagtgtcagcaggagttaactctagttgaaaaataccaagcaacagttaactttaactgagttaatggaatgaataattttgaaa 28314594  T
Q  213 ggaagaa 219  Q
    || ||||    
T  28314593 gggagaa 28314587  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 14442063 - 14442018
Alignment:
Q  185 tgagttaagagaatgagtaattttgaaaggaagaatagtaattttc 230  Q
    |||||||||||||||||||||||||||||| |||| || |||||||    
T  14442063 tgagttaagagaatgagtaattttgaaagggagaagagcaattttc 14442018  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 23465780 - 23465810
Alignment:
Q  102 ttaaaaagtaattgaaccgatcttaaaagtg 132  Q
    |||||||||||||||||||||||||||||||    
T  23465780 ttaaaaagtaattgaaccgatcttaaaagtg 23465810  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 17916202 - 17916109
Alignment:
Q  119 cgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatgagtaattttgaaa 212  Q
    |||||||||||||| || ||||||||||| |||   |||||||  ||| |||||||| |||||| ||||||||| |||||||||||||||||||    
T  17916202 cgatcttaaaagtgtcagcgagagttaactctaatcgaaaaatgtcgaacggaaatttactctaattgagttaaaagaatgagtaattttgaaa 17916109  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 40254631 - 40254547
Alignment:
Q  140 gagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatgagtaattttgaaaggaagaatagta 224  Q
    |||||||| || |||||||||| |||||||| | |||| ||||| |||| |||| ||||||| |||||||||||| |||| ||||    
T  40254631 gagttaactctggctgaaaaatgccgagcgggagttaattctagctgagctaagggaatgagcaattttgaaagggagaaaagta 40254547  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 31847431 - 31847317
Alignment:
Q  117 accgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatgagtaattttgaaaggaa 216  Q
    |||||||||||||||| || ||||||||||| |  ||||||||||  |||||| || |||||| | | || || ||  ||||||| |||||||||||| |    
T  31847431 accgatcttaaaagtgtcagcgagagttaactcacgctgaaaaatgtcgagcgtaagttaactattgctgggtcaaaggaatgagcaattttgaaaggga 31847332  T
Q  217 gaatagtaattttca 231  Q
    ||| || ||||||||    
T  31847331 gaagagcaattttca 31847317  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 5961828 - 5961701
Alignment:
Q  102 ttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatgag 201  Q
    ||||||||| ||||||| |||||||||||||||||    ||||||| ||| || |||||||  |||| | | |||||||||| ||||||||| ||||| |    
T  5961828 ttaaaaagtgattgaactgatcttaaaagtgccaatagaagttaactctaactaaaaaatatagagcaggagttaactctagctgagttaag-gaatggg 5961730  T
Q  202 taattttgaaaggaagaatagtaattttc 230  Q
     |||||||| ||| |||||||||||||||    
T  5961729 caattttgagagggagaatagtaattttc 5961701  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 38202046 - 38202009
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtg 132  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38202046 aaccgatttaaaaagtaattgaaccgatcttaaaagtg 38202009  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 30370078 - 30370168
Alignment:
Q  102 ttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaa 192  Q
    ||||||||| |||||||||||| |||| |||||| |  |||||||| | |  ||||||||  ||||||||| |||||||||| ||||||||    
T  30370078 ttaaaaagtgattgaaccgatcataaatgtgccagcaggagttaactccaaatgaaaaatgacgagcggaagttaactctagctgagttaa 30370168  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 38924455 - 38924415
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtgcca 135  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  38924455 aaccgacttaaaaagtgattgaaccgatcttaaaagtgcca 38924415  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 33357382 - 33357436
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccc 149  Q
    ||||| |||||||| |||||||||| |||||||||||| ||||  ||||||||||    
T  33357382 aaccggtttaaaaaataattgaaccaatcttaaaagtggcaacatgagttaaccc 33357436  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 9030645 - 9030608
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtg 132  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  9030645 aaccgatttaaaaagtgattgaatcgatcttaaaagtg 9030608  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 33435428 - 33435472
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtgccaacga 139  Q
    |||||| ||||||||||||| ||| |||||||||| |||||||||    
T  33435428 aaccgacttaaaaagtaattaaactgatcttaaaaatgccaacga 33435472  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 48078636 - 48078681
Alignment:
Q  116 aaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaat 161  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||    
T  48078636 aaccgatcttaaaagtgccaacgagagttaactctagttgaaaaat 48078681  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 5721739 - 5721673
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaat 161  Q
    ||||||||| ||||||||||||| |||||||||||||  || || |||||||| ||| |||||||||    
T  5721739 aaccgatttgaaaagtaattgaatcgatcttaaaagtctcatcgtgagttaactctaactgaaaaat 5721673  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 22600693 - 22600588
Alignment:
Q  102 ttaaaaagtaattgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatgag 201  Q
    |||||||||||||||| ||||||||||| || ||  | |||||||| | |     |||||  ||||||  |||||||||| ||||||| ||| |||||||    
T  22600693 ttaaaaagtaattgaatcgatcttaaaaatgtcagtgtgagttaacacaa-----aaaatgtcgagcgagaattaactctcgttgagtgaagggaatgag 22600599  T
Q  202 taattttgaaa 212  Q
    |||||||||||    
T  22600598 taattttgaaa 22600588  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 38482378 - 38482333
Alignment:
Q  137 cgagagttaaccctagctgaaaaataccgagcggaaattaactcta 182  Q
    ||||||||||| |||||||||||||| ||| | |||||||||||||    
T  38482378 cgagagttaactctagctgaaaaatatcgaacagaaattaactcta 38482333  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 11754722 - 11754766
Alignment:
Q  103 taaaaagtaattgaaccgatcttaaaagtgccaacgagagttaac 147  Q
    |||||||| ||||||||||||||||||||| || ||| |||||||    
T  11754722 taaaaagtgattgaaccgatcttaaaagtgtcagcgacagttaac 11754766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 16780798 - 16780830
Alignment:
Q  102 ttaaaaagtaattgaaccgatcttaaaagtgcc 134  Q
    ||||||||| |||||||||||||||||||||||    
T  16780798 ttaaaaagtgattgaaccgatcttaaaagtgcc 16780830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 32820825 - 32820709
Alignment:
Q  114 tgaaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccgagcggaaattaactctagttgagttaagagaatgagtaattttgaaag 213  Q
    |||||||||||||| |||| ||  | |||||||| ||| |||||||||| |||||| || ||||   ||  |||||||| | |||||| |||||| ||||    
T  32820825 tgaaccgatcttaatagtgtcagtgggagttaactctaactgaaaaatatcgagcgaaagttaatagtaactgagttaacaaaatgagcaattttaaaag 32820726  T
Q  214 gaagaatagtaattttc 230  Q
    |||||| ||||||||||    
T  32820725 gaagaagagtaattttc 32820709  T

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Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 16371 - 16334
Alignment:
Q  95 aaccgatttaaaaagtaattgaaccgatcttaaaagtg 132  Q
    |||||||||||||||||||||||||| |||||||||||    
T  16371 aaccgatttaaaaagtaattgaaccggtcttaaaagtg 16334  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 31386 - 31308
Alignment:
Q  152 gctgaaaaataccgagcggaaattaactctagttgagttaagagaatgagtaattttgaaaggaagaatagtaattttc 230  Q
    |||||||||| |||| ||  | |||||||  | ||| ||||||||||||| ||||||||||||||||| || |||||||    
T  31386 gctgaaaaatgccgaacgtgagttaactcatgctgaattaagagaatgagcaattttgaaaggaagaagagcaattttc 31308  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 896193 - 896239
Alignment:
Q  184 ttgagttaagagaatgagtaattttgaaaggaagaatagtaattttc 230  Q
    ||||||||||||||| |||||| || ||||||||||||| |||||||    
T  896193 ttgagttaagagaataagtaatcttaaaaggaagaatagcaattttc 896239  T

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