View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15519_low_12 (Length: 229)
Name: NF15519_low_12
Description: NF15519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15519_low_12 |
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| [»] scaffold0129 (2 HSPs) |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 16920158 - 16920360
Alignment:
| Q |
18 |
tgaaaaccttcatttcatgaccatgtatcgcaactatttcctttctaataatcattcttattatgatggcacttctatcctcctaaaccttacaaataat |
117 |
Q |
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| T |
16920158 |
tgaaaaccttcatttcatgaccatgtatcgcaactatttcctttctaataatcattcttattatgatggcacttctatcctcctaaaccttacaaataat |
16920257 |
T |
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| Q |
118 |
cctttgcccggtgaagcattttacgatactttgtatatactttctggtgagaggtttgagattatggtcaaattagattggcctcctccatttgatgatg |
217 |
Q |
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| T |
16920258 |
cctttgcccggtgaagcattttacgatactttgtatatactttctggtgagaggtttgagattatggtcaaattagattggcctcctccatttgatgagg |
16920357 |
T |
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| Q |
218 |
atg |
220 |
Q |
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||| |
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| T |
16920358 |
atg |
16920360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 16918655 - 16918791
Alignment:
| Q |
49 |
aactatttcctttctaataatcattcttattatgatggcacttctatcctcctaaaccttacaaataatcctttgcccggtgaagcattttacgatactt |
148 |
Q |
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| T |
16918655 |
aactacttcctttctaataacaattcttattatgatggtacttctatcctcttaaaccatacaaataatcctttgctcggtgatgcattttacagtaatt |
16918754 |
T |
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| Q |
149 |
tgtatatactttctggtgagaggtttgagattatggt |
185 |
Q |
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| T |
16918755 |
tgtatatactttttggtgagaggtttgagaatatggt |
16918791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 16918486 - 16918531
Alignment:
| Q |
18 |
tgaaaaccttcatttcatgaccatgtatcgcaactatttcctttct |
63 |
Q |
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| T |
16918486 |
tgaaaatcttcatttcatgaccatgtatcacaactacttcctttct |
16918531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 2742723 - 2742657
Alignment:
| Q |
39 |
catgtatcgcaactatttcctttctaataatcattcttattatgatggcacttctatcctcctaaac |
105 |
Q |
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| T |
2742723 |
catgtatcgcaactactttatttctagtaatcattcttattatgatgatacttgtatcctcctaaac |
2742657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 287105 - 287033
Alignment:
| Q |
148 |
ttgtatatactttctggtgagaggtttgagattatggtcaaattagattggcctcctccatttgatgatgatg |
220 |
Q |
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| T |
287105 |
ttgtatttactttcaggagagaggtttgagaatatgataaaagtagattggccacctccatttcatgaggatg |
287033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 48742701 - 48742648
Alignment:
| Q |
157 |
ctttctggtgagaggtttgagattatggtcaaattagattggcctcctccattt |
210 |
Q |
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| T |
48742701 |
ctttctggtgagacgtttgagaataaggtcaaattagattggccacctccattt |
48742648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 48742826 - 48742772
Alignment:
| Q |
29 |
atttcatgaccatgtatcgcaactatttcctttctaataatcattcttattatga |
83 |
Q |
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| T |
48742826 |
atttcatgaacatgtaccgcaactatttcatatctaataatcattcttcttatga |
48742772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 17879 - 17826
Alignment:
| Q |
157 |
ctttctggtgagaggtttgagattatggtcaaattagattggcctcctccattt |
210 |
Q |
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| T |
17879 |
ctttttggtgagaggtttgagaataaggtcaaattaaattggccacctccattt |
17826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 34275 - 34222
Alignment:
| Q |
157 |
ctttctggtgagaggtttgagattatggtcaaattagattggcctcctccattt |
210 |
Q |
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| T |
34275 |
ctttttggtgagaggtttgagaataaggtcaaatttgattggccacctccattt |
34222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 17011 - 16972
Alignment:
| Q |
157 |
ctttctggtgagaggtttgagattatggtcaaattagatt |
196 |
Q |
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| T |
17011 |
ctttctggtgagaggtttgagaataaggtcaaattagatt |
16972 |
T |
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