View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15519_low_8 (Length: 328)

Name: NF15519_low_8
Description: NF15519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15519_low_8
NF15519_low_8
[»] chr2 (4 HSPs)
chr2 (12-326)||(16919855-16920170)
chr2 (33-89)||(7429889-7429945)
chr2 (18-110)||(44913374-44913466)
chr2 (34-110)||(44919386-44919462)
[»] chr6 (7 HSPs)
chr6 (19-171)||(2742739-2742891)
chr6 (13-147)||(287474-287608)
chr6 (36-104)||(21379342-21379410)
chr6 (40-86)||(29144396-29144442)
chr6 (36-82)||(34259155-34259201)
chr6 (36-82)||(34264520-34264566)
chr6 (18-103)||(21375232-21375317)
[»] chr5 (10 HSPs)
chr5 (37-89)||(27174371-27174423)
chr5 (36-89)||(42782293-42782346)
chr5 (19-89)||(32642041-32642111)
chr5 (17-89)||(9052385-9052457)
chr5 (22-74)||(42835410-42835462)
chr5 (36-110)||(42797142-42797216)
chr5 (36-110)||(16487605-16487679)
chr5 (36-102)||(24654592-24654658)
chr5 (36-142)||(42841485-42841591)
chr5 (56-133)||(39725460-39725537)
[»] chr3 (1 HSPs)
chr3 (12-89)||(9704362-9704439)
[»] chr1 (2 HSPs)
chr1 (17-134)||(344207-344324)
chr1 (36-106)||(51875569-51875639)
[»] chr7 (3 HSPs)
chr7 (40-134)||(5441486-5441580)
chr7 (40-134)||(5450496-5450590)
chr7 (41-89)||(42445433-42445481)
[»] scaffold0054 (1 HSPs)
scaffold0054 (36-80)||(34362-34406)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 16920170 - 16919855
Alignment:
Q  12 atgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16920170 atgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaatgttgaaaggacagagaagacaagatct 16920071  T
Q  112 tcaggtatattgttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaaagctgaaataccaattcaaac-nnnnnnntatcaagcaaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  16920070 tcaggtatattgttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaaagctgaaataccaattcaaacaaaaaaaatatcaagcaaa 16919971  T
Q  211 attcatttgtatcatgactataaagtggaataaattacacgaaattgaggaattctnnnnnnnttcacaaaatttaaaacataaccatttcaatcaattt 310  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  16919970 attcctttgtatcatgactataaagtggaataaattacacgaaattgaggaattctaaaaaaattcacaaaatttaaaacataaccatttcaatcaattt 16919871  T
Q  311 atttgccaagaaaaaa 326  Q
    ||||||||||||||||    
T  16919870 atttgccaagaaaaaa 16919855  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 7429889 - 7429945
Alignment:
Q  33 ggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 89  Q
    |||||||||||| | |||||||||||||||||||||||||||||  || ||||||||    
T  7429889 ggcccatgatttgcatacgcatccaaatcgcttcaaagattttattggcaattttga 7429945  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 44913374 - 44913466
Alignment:
Q  18 gttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 110  Q
    ||||||||| || || | ||||| ||||| ||||||||||||||| || |||||||||| ||  | |||||| || | |||||| ||||||||    
T  44913374 gttttcaaataagaaagtccatggtttacatacgcatccaaatcgttttaaagattttaaagaaagttttgacagaatagagaatacaagatc 44913466  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 44919386 - 44919462
Alignment:
Q  34 gcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 110  Q
    ||||||||||||||||| ||| ||||| |||| |||||||||| ||| | |||||| || | ||||||  |||||||    
T  44919386 gcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgacagaatagagaatgcaagatc 44919462  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 2742739 - 2742891
Alignment:
Q  19 ttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggta 118  Q
    ||||||||||| | | |||||||||||| |||||||||||||||||| |||||||||||||| |||||| | |||| ||||| | |||||||||| | ||    
T  2742739 ttttcaaacaagaggacccatgatttacatacgcatccaaatcgctttaaagattttagaggcaattttaacaggatagagagggcaagatcttcggata 2742838  T
Q  119 tattgttgctaaccttaacatttgtggcagacacgaatttcttcatctccaaa 171  Q
    |||  ||||||||||| |||||| | |||  ||| | ||||||||||| ||||    
T  2742839 tatgattgctaacctttacatttatagcacccacaattttcttcatcttcaaa 2742891  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 287474 - 287608
Alignment:
Q  13 tgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatctt 112  Q
    ||||| ||||||||||| |  | ||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||| || ||||||||  | |||||    
T  287474 tgaagattttcaaacaagagagtccatgatttacatacacatccaaatcgttttaaagattttagaggcaattttgaaaagatagagaagatcaaatctt 287573  T
Q  113 caggtatattgttgctaaccttaacatttgtggca 147  Q
    | | ||||| ||  |||| ||||| ||||||||||    
T  287574 ctgatatatggtcactaaacttaagatttgtggca 287608  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 21379342 - 21379410
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagac 104  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| || || || | |||||||||    
T  21379342 ccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagagaagac 21379410  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 29144442 - 29144396
Alignment:
Q  40 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattt 86  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  29144442 gatttacgaacgcatccaaatcgcttcaaagatttaagaggcaattt 29144396  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 34259155 - 34259201
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggta 82  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||||    
T  34259155 ccatgatttacgaacgcatccaaatcgctttaaagacttaagaggta 34259201  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 34264520 - 34264566
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggta 82  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||||    
T  34264520 ccatgatttacgaacgcatccaaatcgctttaaagacttaagaggta 34264566  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 21375232 - 21375317
Alignment:
Q  18 gttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaaga 103  Q
    ||||||||| || | || ||||||||||   ||||||||||||| |||||||||||| |||| |||||| || || | ||||||||    
T  21375232 gttttcaaataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagagataatttcgatagaatagagaaga 21375317  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 27174371 - 27174423
Alignment:
Q  37 catgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 89  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  27174371 catgatttgcgtacgcatccaaatcgcttcaaagatttcagaggtaattttga 27174423  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 42782346 - 42782293
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 89  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  42782346 ccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttga 42782293  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 32642111 - 32642041
Alignment:
Q  19 ttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 89  Q
    |||||||||||||| | |||||||||||||||  || ||||| ||| ||||||||| ||||||||||||||    
T  32642111 ttttcaaacaaaaatgaccatgatttacgtacatattcaaattgctacaaagatttaagaggtaattttga 32642041  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9052457 - 9052385
Alignment:
Q  17 ggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 89  Q
    |||| |||||||||| ||  |||||||| |||||||||||||||  ||| |||||||||| ||||||||||||    
T  9052457 ggttctcaaacaaaagggttcatgatttgcgtacgcatccaaatttctttaaagattttacaggtaattttga 9052385  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 42835410 - 42835462
Alignment:
Q  22 tcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattt 74  Q
    |||||||||| || |||||||||  ||||||||||||||||||||||||||||    
T  42835410 tcaaacaaaagggaccatgatttgtgtacgcatccaaatcgcttcaaagattt 42835462  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 42797142 - 42797216
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 110  Q
    |||||||||| ||||  ||| |||||||||||||||||| | |||||||||||| || | |||||||| ||||||    
T  42797142 ccatgatttaagtacatatcaaaatcgcttcaaagatttaataggtaattttgagagaatagagaagaaaagatc 42797216  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 16487605 - 16487679
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatc 110  Q
    |||||||||  ||||||||||||| | |||||||||||| | ||||| |||||| || | |||||||| ||||||    
T  16487605 ccatgatttgtgtacgcatccaaacctcttcaaagatttgataggtagttttgagagaagagagaagaaaagatc 16487679  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 24654658 - 24654592
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaag 102  Q
    ||||||||||||||| || ||||| ||||| || ||||||| ||||||||| ||||| | |||||||    
T  24654658 ccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagagaag 24654592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 42841485 - 42841591
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctta 135  Q
    |||||||||| |||||||| ||||| ||||||||||||  | ||| | |||||| || | | ||||||||| ||| || ||||| |  |||||||||| |    
T  42841485 ccatgatttatgtacgcattcaaatggcttcaaagattcaatagggagttttgagagaatatagaagacaatatcatcgggtatgtgattgctaacctga 42841584  T
Q  136 acatttg 142  Q
    |||||||    
T  42841585 acatttg 42841591  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 39725460 - 39725537
Alignment:
Q  56 caaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacct 133  Q
    ||||||||||||||||||| | ||| | |||||| || | ||||||||||| ||| ||||||| ||  ||||||||||    
T  39725460 caaatcgcttcaaagatttgaaaggaagttttgacagaatagagaagacaatatcatcaggtacatgattgctaacct 39725537  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 9704439 - 9704362
Alignment:
Q  12 atgaaggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 89  Q
    |||| |||||||||| ||||  | |||||||||||| || |||| |||||| || |||||||| ||||||||||||||    
T  9704439 atgatggttttcaaataaaagtgtccatgatttacgaacacatctaaatcgttttaaagatttcagaggtaattttga 9704362  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 344324 - 344207
Alignment:
Q  17 ggttttcaaacaaaaaggcccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcagg 116  Q
    |||||||||| |||| |||  | ||||||| |||||||||||| || |||||||| || | ||||||||| || || ||| |||||| |||||| | |||    
T  344324 ggttttcaaataaaagggcataagatttacttacgcatccaaaacgtttcaaagacttcaaaggtaatttagatagaacaaagaagataagatcattagg 344225  T
Q  117 tatattgttgctaacctt 134  Q
    |||||  ||| |||||||    
T  344224 tatatgtttgttaacctt 344207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 51875569 - 51875639
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaa 106  Q
    ||||||||||| ||| |||||||||||||| |||||||  ||||||| |||||| || |  ||||||||||    
T  51875569 ccatgatttacatacacatccaaatcgctttaaagattgaagaggtagttttgatagaatcgagaagacaa 51875639  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 5441580 - 5441486
Alignment:
Q  40 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 134  Q
    ||||| |||||||||||||| || ||||| ||||| | ||| |||||||| |  | ||||||||||||||| | ||||||||  || ||||||||    
T  5441580 gatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggtatatcatttctaacctt 5441486  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 5450590 - 5450496
Alignment:
Q  40 gatttacgtacgcatccaaatcgcttcaaagattttagaggtaattttgaaaggacagagaagacaagatcttcaggtatattgttgctaacctt 134  Q
    ||||| |||||||||||||| || ||||| ||||| | ||| |||||||| |  | ||||||||||||||| | ||||||||  || ||||||||    
T  5450590 gatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggtatatcatttctaacctt 5450496  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 42445481 - 42445433
Alignment:
Q  41 atttacgtacgcatccaaatcgcttcaaagattttagaggtaattttga 89  Q
    ||||||| || ||| |||||||||| |||||||| ||||||||||||||    
T  42445481 atttacgaacacattcaaatcgcttaaaagatttaagaggtaattttga 42445433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 34362 - 34406
Alignment:
Q  36 ccatgatttacgtacgcatccaaatcgcttcaaagattttagagg 80  Q
    |||||||||||| ||||||| |||||| ||||||||||| |||||    
T  34362 ccatgatttacgaacgcatcgaaatcggttcaaagatttaagagg 34406  T

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