View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1552-INSERTION-1 (Length: 680)
Name: NF1552-INSERTION-1
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1552-INSERTION-1 |
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Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 7 - 617
Target Start/End: Complemental strand, 7014113 - 7013503
Alignment:
| Q |
7 |
attcaagaatactatttctactatggaagcgtccaaggtctaaagttgttatcaaaaggtttagaaaattgaattgtaacaacnnnnnnnccaaatcatc |
106 |
Q |
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| T |
7014113 |
attcaagaatactatttctactatggaagcgtccaaggtctaaagttgttatcaaaaggtttagaaaattgaattgtaacaacaaaaaaaccaaatcatc |
7014014 |
T |
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| Q |
107 |
aaaaagcaactcaaatggtgctcatcatttagtggagtgtgattcaagaaagccaataaggattgctacattcaatgttgctatgttttcattagcacca |
206 |
Q |
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| T |
7014013 |
aaaaagcaactcaaatggtgctcatcatttagtggagtgtgattcaagaaagccaataaggattgctacattcaatgttgctatgttttcattagcacca |
7013914 |
T |
|
| Q |
207 |
gctatttcagaacatgatgattatgttatgtataatcaaaagaagaaaaattctaattctacaacaagtgctgattttccaaagagtatattaaaacaat |
306 |
Q |
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| T |
7013913 |
gctatttcagaaaatgatgattatgttatgtataatcaaaagaagaaaaattctaattctacaacaagtgctgattttccaaagagtatattaaaacaat |
7013814 |
T |
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| Q |
307 |
caccattgcattcttctatgaatcttataaactcagataccaacattatgccaagatcaaatttgaagcaggtttcaattaatctacctgataatgaaat |
406 |
Q |
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| T |
7013813 |
caccattgcattcttctatgaatctttcaaactcagataccaacattatgccaagatcaaatttgaagcaggtttcaattaatctacctgataatgaaat |
7013714 |
T |
|
| Q |
407 |
ttcattggcaaatagtaagattcttggttcaatagaagatattggaagtgtttcctctagaaggaatcaagtaccagcaaggtctcctgtttgttttcct |
506 |
Q |
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| T |
7013713 |
ttcattggcaaatagtaagattcttggttcaatagaagatattggaagtgtttcctctagaaggaatcaagtaccagcaaggtctcctgtttgttttcct |
7013614 |
T |
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| Q |
507 |
ttccttatgaatatgaatatgaattactgtgaagaggtgaatgagaaatttagtagcagtagaagcattttggaagttcttagagagattgatgctgatg |
606 |
Q |
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| T |
7013613 |
ttccttatgaatatgaatatgaattactgtgaagaggtgaatgagaaatttagtagcagtagaagcattttggaagttcttagagagattgatgctgatg |
7013514 |
T |
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| Q |
607 |
tggtagcactg |
617 |
Q |
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| T |
7013513 |
tggtggcactg |
7013503 |
T |
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