View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1552-INSERTION-3 (Length: 244)
Name: NF1552-INSERTION-3
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1552-INSERTION-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 26677943 - 26677706
Alignment:
| Q |
5 |
acattgaggggagaattgtccaagcaaaagaccccgattgggaatagaaaattcgtagaaagaggaagttccactattcatgtcactcctacacgacaca |
104 |
Q |
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| T |
26677943 |
acattgaggggagaattgtccaagcaaaagacccggattgggaatagaaaattcgtagaaagaggaagttccactattcatgtcactcctacacgacaca |
26677844 |
T |
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| Q |
105 |
tcatattccaacagtgaggaaaagttgaacaacgaacgtgaactttacgaagaaataaatgaaccggtggtggaatttacctgcttagaatgtacatgat |
204 |
Q |
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| T |
26677843 |
tcatattccaacagtgaggaaaagttgaacaac--acgtgaactttacgaagaaataaatgaaccggtggtggaatttacctgcagaaaatgtacatgat |
26677746 |
T |
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| Q |
205 |
tttataatttgtggttgaacataaaaaccgattaagtgag |
244 |
Q |
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| T |
26677745 |
tttataatttgtggttgaacataaaaaccgattaagtgag |
26677706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 26688295 - 26688524
Alignment:
| Q |
5 |
acattgaggggagaattgtccaagcaaaagaccccgattgggaatagaaaattcgtagaaagaggaagttccactattcatgtcactcctacacgacaca |
104 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |||| |
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| T |
26688295 |
acattgaggggagaattgtccaagaaaaagaccccgattgggaatagaaaattcttagaaagaggaag-accactatttatgtcactcctacacggcaca |
26688393 |
T |
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| Q |
105 |
tcatattccaacagtgaggaaaagttgaacaa--cgaacgtgaactttacgaagaaataaatgaaccggtggtggaatttacctgcttagaatgtacatg |
202 |
Q |
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| T |
26688394 |
tcacattccaacagtaaggaaaagttgaataattcgaacgtgaactttacgaagaaataaatgaaccggtggtggaatttacatgcaggaaatatacatg |
26688493 |
T |
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| Q |
203 |
attttataatttgtggttgaacataaaaacc |
233 |
Q |
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| T |
26688494 |
attttataatttgtggttgagcataaaaacc |
26688524 |
T |
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