View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15520_high_1 (Length: 449)
Name: NF15520_high_1
Description: NF15520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15520_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 45704841 - 45704407
Alignment:
| Q |
11 |
acctctgttacctcactaccacagttactcaatgattcgataccattccctttaaagtctgacacaaacatgtgaaataatgagcgaacatatgcacaca |
110 |
Q |
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| T |
45704841 |
acctctgttacctcaataccacagttactcaatgcttcgatgacattctctttcaagtctggcacaaacatgtgaaataatgagccaacatatgcacaca |
45704742 |
T |
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| Q |
111 |
tttggggtgcatcgtcgcattccaacaatcttatataagcagctctaaatgataatgacctaagatctctaagacttgatgtaaaaaacaagcagcttct |
210 |
Q |
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| T |
45704741 |
tttggtgtgcgtcgtcacattccaacaatcttatataagcagctctaaatgataatgacctaggatctctaagacttgatgtaaaaaacaagcagcttct |
45704642 |
T |
|
| Q |
211 |
tttaaaaccttgatccctaaaatacgatttactctttttcgctctctgaaccgcagcttgttgaatttgttggtttgcatacagctgattggcagtcctc |
310 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45704641 |
tttaaaaccttgatccctaaaatatgatttactctttttcgctctctgaaccgcagcttgttgaatttgttggtttgcatacagctgattggcagtcctt |
45704542 |
T |
|
| Q |
311 |
gttctgcgccttcggttatcagtttcattgtcagttacaattactccaggattttgatgttgcatagcaggcaacgctaaaatctatgaaattctgttta |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45704541 |
gttctgcgccttcggttatcagtttcattgtcagttacaattactccaggattttgatgttccatagcaggcaacgctaaaatctatgaaattctgttta |
45704442 |
T |
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| Q |
411 |
aagaaactagattagatggctagatcaataaactg |
445 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
45704441 |
aagaaattagattagatggctagatcaataaactg |
45704407 |
T |
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