View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15520_low_1 (Length: 822)
Name: NF15520_low_1
Description: NF15520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15520_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 281 - 666
Target Start/End: Complemental strand, 1590652 - 1590267
Alignment:
| Q |
281 |
agagaaaatgctgttgtggtgggatataatt--gatggtaatttcttaaattaggaaccgatcaagtgatatcgatgttagaaactaaattgatagtgta |
378 |
Q |
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| T |
1590652 |
agagaaaatgctgttttggtgggatataattttgatggtaatttcttaaattaggaaccga---agtgttatcgatgttagaaactaaattgatactgta |
1590556 |
T |
|
| Q |
379 |
agtggttagttgtatatgcactgataaacattgttgttacagattcaaagatatttttgaaatatattcataatatctgagacttatttgagagcatcct |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1590555 |
agtggttagttgtatatgcactgataaacattgttgttacagattcaaagatatttttgaaatatattcataatatctgagacttatttgagagcatcct |
1590456 |
T |
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| Q |
479 |
aaaaagtttgggatattttatctgaagttgcaaagtagcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcctcccccc |
578 |
Q |
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| T |
1590455 |
aaaaagtctgggatattttatctgaagttgcaaagtcgcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcctccgccc |
1590356 |
T |
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| Q |
579 |
tcacattttcctcaaaaacaataacaattaggctaatataaata-tggttgaatgacataaacttagacaacaaatggtacaatgacat |
666 |
Q |
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| T |
1590355 |
tcacattttcctcataaacaataacaattaggctaatataaatattagatgaatgacataaacttagacaacaaatggtacaatgacat |
1590267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 486 - 624
Target Start/End: Original strand, 1588989 - 1589129
Alignment:
| Q |
486 |
ttgggatattttatctgaagttgcaaagtagcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcct-cccccctcacat |
584 |
Q |
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|||| ||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1588989 |
ttggaatagtttatctgaagttgcaaagtcccaaaactgtgtcttctttgaaacatgtcttcattgtttctcaccctctattctcctccccccctcacat |
1589088 |
T |
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| Q |
585 |
tttcctcaaaaacaataacaattaggct-aatataaatatg |
624 |
Q |
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||| |||| ||||| ||||||||||||| |||||||||||| |
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| T |
1589089 |
ttttctcacaaacattaacaattaggctaaatataaatatg |
1589129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 1588841 - 1588959
Alignment:
| Q |
162 |
ttaactttaattttttgctatcttttattaatgtcgtctcgtctgtgacgatatcatttaaggattggctctc--aacattcacagtggctgcctaggag |
259 |
Q |
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| T |
1588841 |
ttaactttaattttttgctat-ttttattaatgtcgtttcgtcagtgacgatatcatttaaggattggttctcaaaacattcgcagtggctgccgaggag |
1588939 |
T |
|
| Q |
260 |
tattggcctttgccaacctt |
279 |
Q |
| |
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| || ||||||||||||||| |
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| T |
1588940 |
ttttagcctttgccaacctt |
1588959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 1588389 - 1588468
Alignment:
| Q |
85 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgcttatgatgattttgatgttcaactgtta |
164 |
Q |
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| T |
1588389 |
aaattgcttgaagataagctttaattgctttatggggtctgaattctactgcttatgatgattttgattttcaactgtta |
1588468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 9e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 647 - 803
Target Start/End: Complemental strand, 19267820 - 19267666
Alignment:
| Q |
647 |
aacaaatggtacaatgacatggttgattttttggggggtaggttcaggaatagattctgttgatggaacaacagaagaagatggtgaatttaaagcatta |
746 |
Q |
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||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
19267820 |
aacaaatggatcaatgacatggttgattttttaaggg-taggttcaggaatagattctgttgatggaacaacagaagaagatggtgaatttaaaaca-tc |
19267723 |
T |
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| Q |
747 |
actatcatcaaaataaaacaagagaaagaggacttgctgaaaagcatgcgtcttttg |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19267722 |
actatcatcaaaataaaacaagagaaagaggacttgctgaaaagcatgtgtcttttg |
19267666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 19268252 - 19268071
Alignment:
| Q |
85 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgctta----tgatgattttgatgttcaactgttaactttaattttttgct |
180 |
Q |
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|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
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| T |
19268252 |
aaattgcttgaaaataagctttgattgctttatagggtttgaattctactgcttaattatgatggttttgatgttcaactgttaactttaattttgtgct |
19268153 |
T |
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| Q |
181 |
atcttttattaatgtcgtctcgtctgtgac--gatatcatttaaggattggctctc--aacattcacagtggctgcctagga |
258 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
19268152 |
atcttttattaatgtcgtctcgtctgtgacgagatatcatttaaggattggttctcaaaacatttgcagtggctgcctagga |
19268071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 8152870 - 8152933
Alignment:
| Q |
98 |
ataagctttaattgctttatggggtttgaattctactgcttatgatgattttgatgttcaactg |
161 |
Q |
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||||||||| ||| |||||||| | || |||| ||||||||||||||||||||||||||||||| |
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| T |
8152870 |
ataagctttgattactttatggaggtttaattatactgcttatgatgattttgatgttcaactg |
8152933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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