View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_high_12 (Length: 313)
Name: NF15521_high_12
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 5689804 - 5690077
Alignment:
| Q |
20 |
attaactaattggtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaa |
119 |
Q |
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| T |
5689804 |
attaactaatttgtaaaaccagcaatgacagcatgaggctcaagagctttagcagcaggagaagcttcaacagcaggagaaggctcaacatgtttaccaa |
5689903 |
T |
|
| Q |
120 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689904 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacacc |
5690003 |
T |
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| Q |
220 |
ttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactg |
293 |
Q |
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| T |
5690004 |
ttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactg |
5690077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 25914500 - 25914733
Alignment:
| Q |
32 |
gtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaagaagctcttgtg |
131 |
Q |
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||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||| |
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| T |
25914500 |
gtaaaaccagcaatggtagcatgtggctcaagagctttagcagcaggagaagcttcaacattagggttaggctcaactggtttaccaagaagctcttgtg |
25914599 |
T |
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| Q |
132 |
gcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattcc |
231 |
Q |
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| T |
25914600 |
gcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattcc |
25914699 |
T |
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| Q |
232 |
agaaccaccagtcacagctagataagtgtcctca |
265 |
Q |
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|| |||||||||||||| |||||| ||||||||| |
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| T |
25914700 |
agtaccaccagtcacagttagatatgtgtcctca |
25914733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 264
Target Start/End: Complemental strand, 6792803 - 6792639
Alignment:
| Q |
100 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
199 |
Q |
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|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
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| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
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| Q |
200 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctc |
264 |
Q |
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|| |||||||| | |||||||||||||||||||| |||||||||||||| | |||||| ||||| |
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| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctc |
6792639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 6800246 - 6800131
Alignment:
| Q |
128 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
227 |
Q |
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|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
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| Q |
228 |
ttccagaaccaccagt |
243 |
Q |
| |
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|||||| |||||||| |
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| T |
6800146 |
ttccagttccaccagt |
6800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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