View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_high_2 (Length: 476)
Name: NF15521_high_2
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 461
Target Start/End: Original strand, 50088653 - 50089084
Alignment:
| Q |
30 |
gactgaaggtcgcagatgggcagcgctaatgtaggacttcacttcactctactctcacttaacctcttttttaattttcataactccccacttcgacatc |
129 |
Q |
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| T |
50088653 |
gactgaagggggcagatgggaagagttaatgtaggacttcacgtcactcaacgctcacttaacattggtattaattttcataactccccacttcgacatc |
50088752 |
T |
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| Q |
130 |
taactaaaccctaacctccttatacacctgtaaaatctttatataatttctcttgtttgtattattatacctcattgttattaatatggttctctcactt |
229 |
Q |
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| T |
50088753 |
taactaaaccctaacctccttatacacctgtaaaatctttatataatttctcttgtttgtattattatacctcattgttattaatatggttctctcactt |
50088852 |
T |
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| Q |
230 |
aacatctttagcaatgtggtttggtttgaaaaccaaattggagatacccgtgtttgcttccaactatacatatatgtgattggggatataaatgtgtacc |
329 |
Q |
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| T |
50088853 |
aacatctttagcaatgtggtttggtttgaaaaccaaattggagatacccgtgtttgcttccaactatacatatatgtgattagggatataaatgtgtacc |
50088952 |
T |
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| Q |
330 |
ccttcttgtttgatatataagaagaaataaacttgttcacaccatataagaaaagtacttacttttatttaagttttttaaagtaatagaaaaataatta |
429 |
Q |
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| T |
50088953 |
ccttcttgtttgatatataagaagaaataaacttgttcacaccatataagaaaagtccttacttttatttaagttttttaaagtaatagaaaaataatta |
50089052 |
T |
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| Q |
430 |
tactctctaaaatgtccctcatggtactagtt |
461 |
Q |
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| T |
50089053 |
tactctctaaaatgtccctcatggtactagtt |
50089084 |
T |
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