View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15521_high_4 (Length: 425)
Name: NF15521_high_4
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_high_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 36780188 - 36779763
Alignment:
| Q |
1 |
tttttagtaatttaaaatgtacatcaa-tattggattgggacctgctactgtctgtcgccattacttgagcacgttacaccaggtttctcattactaacc |
99 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36780188 |
tttttagtaatttaaaatgtacataaaatattggattgggacctgctactgtctgtcgccattacttgagcacgttacaccaggtttctcattactaacc |
36780089 |
T |
|
| Q |
100 |
ttctattctataaatagatatcaatactctccaaccaaataaacacacaccaaaaatggcaactatgattggaggatctgttttgctatgcttcttctca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36780088 |
ttctattctataaatagatatcaatactctccaaccaaataaacacacgccaaaaatggcgactatgtttggaggatctgttttgctatgcttcttctca |
36779989 |
T |
|
| Q |
200 |
ctactattactctttccagttgcaatatcacagaaatgcaatccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccctacgtctc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36779988 |
ctactattactctttccagttgcaatatcacagaaatgcaacccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccctacgtctc |
36779889 |
T |
|
| Q |
300 |
tatcctcgtggaaccctcgcaaaaattgttgtgactgggtatttatccattgcgacgtaacaacttctcgtgtcatttggctcgctatccaattctccag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36779888 |
tatcctcgtggaaccctcgcaaaaattgttgtgactgggtatttatccattgcgacgtaacaacttctcgtgtcatttggctcgctatccaattctcaag |
36779789 |
T |
|
| Q |
400 |
cccagaccaattcaccaccccattcc |
425 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36779788 |
cccagaccaattcaccaccccattcc |
36779763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 18141215 - 18141264
Alignment:
| Q |
242 |
ccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccc |
291 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
18141215 |
ccacaagacaaaaaagccctactccaaatcaagaaagaactcaacaaccc |
18141264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University