View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_low_1 (Length: 564)
Name: NF15521_low_1
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 44109428 - 44109970
Alignment:
| Q |
19 |
gatctgtatcaacatgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttg |
118 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44109428 |
gatctgtatcaacctgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcaaacgctttg |
44109527 |
T |
|
| Q |
119 |
aaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgcgtattgatgcgcaatgttgcctttagttgtgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44109528 |
aaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgtgtattgatgcgcaatgttgcctttagttgtgt |
44109627 |
T |
|
| Q |
219 |
ttcccatgcaaatctatttctgttacannnnnnnnagtatcctttctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctt |
318 |
Q |
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|||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44109628 |
ttcccatgcaaatctatttctgtttcattttttt-aggatcctctctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctt |
44109726 |
T |
|
| Q |
319 |
tgtctgcatcggaggattaaacctttcactagaaaaacaatactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgcc |
418 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44109727 |
tgtctgcatcggaggattaaacctttcactataaaaacagtactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgcc |
44109826 |
T |
|
| Q |
419 |
ttatatcctgcttaatctgcctcatttaaatgttaaaacagtgatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaat |
518 |
Q |
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| T |
44109827 |
ttatatcctgcttaatctgcctcatttaaatgttaaaacagtgatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaat |
44109926 |
T |
|
| Q |
519 |
cgtcgataagagagactatgcattaattccagtgtcttattgtt |
562 |
Q |
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| T |
44109927 |
cgtcgataagagagactatgcattaattccagggccttattgtt |
44109970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 121 - 562
Target Start/End: Original strand, 40276437 - 40276884
Alignment:
| Q |
121 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataat-----gcgtattgatgcgcaatgttgcctttagttg |
215 |
Q |
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|||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| | || |
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| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
|
| Q |
216 |
tgtttcccatgcaaatctatttctgttacannnnnnnnagtatcctttctatgcaattgatcatctccatctccttcccgagttccacaatttgacacat |
315 |
Q |
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| T |
40276537 |
tgtttcccatgcaagtctattgttgtttc-cttttactaggaacctctctatgtaattgatcatctccatccccttcctgagctccacaatttgacacat |
40276635 |
T |
|
| Q |
316 |
ctttgtctgcatcggaggattaaacctttcactagaaaaacaatactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtac |
415 |
Q |
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||||||||| || | ||||| |||| |||||||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||| ||||| |
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| T |
40276636 |
ctttgtctggatttggagattatc---ttcagtagaaaaacattaatggaattcctcttaaggtgtcctaaattggaagctcttgtttttcctcaggtac |
40276732 |
T |
|
| Q |
416 |
gcctta----tatcctgcttaatctgcctcatttaaatgttaaaacagtgatatt-acttctatccgctaacttgttaattgattcttatttagggaatt |
510 |
Q |
| |
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||||| |||||||||||||||| ||||||| | |||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
40276733 |
accttaattatatcctgcttaatctgtctcatttcattgttaaaacaatgatatttacttctatccactaacttgttaattgattccaatttagggaatt |
40276832 |
T |
|
| Q |
511 |
ggcaaaatcgtcgataagagagactatgcattaattccagtgtcttattgtt |
562 |
Q |
| |
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|||||| |||| ||||||||| ||||||||| |||||||||| ||||||||| |
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| T |
40276833 |
ggcaaactcgtggataagagaaactatgcataaattccagtgccttattgtt |
40276884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 263 - 505
Target Start/End: Complemental strand, 40450710 - 40450469
Alignment:
| Q |
263 |
tctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctg-catcggaggattaaacctttcactagaaaaacaatac |
361 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||| ||| | |||| |||||||||| || |
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| T |
40450710 |
tctatgtaattgatcatctccatctccttcctgagttccacaatttgacacatctttgtctgactttggag-attgac---ttcagtagaaaaacattaa |
40450615 |
T |
|
| Q |
362 |
tggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgct--taatctgcctcatttaaatgttaaaacag |
459 |
Q |
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||||||| ||| |||||||||||||||||||| | |||||| | |||||||||| ||||||||||| || |||||| || ||||| | |||||| || |
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| T |
40450614 |
tggaatttctcctaaggtgtcctaaactggaagcacttgttttacctctggtacaccttatatccttcttataatctcccccatttctaggttaaatcaa |
40450515 |
T |
|
| Q |
460 |
tgatattacttctatccgctaacttgttaattgattcttatttagg |
505 |
Q |
| |
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|||||||| ||| |||| | ||||||||||||||||||||||||| |
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| T |
40450514 |
tgatattatttccatccattgacttgttaattgattcttatttagg |
40450469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 40450897 - 40450765
Alignment:
| Q |
47 |
tctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatca |
146 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| | || |||| | ||||||||||| ||||| ||| |||| |
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| T |
40450897 |
tctccttattcggttgtgctactgagtggacttgcaagtgtcaagtctcttacactatcaaaggacacttttagggtatgtattaccttttctctcatca |
40450798 |
T |
|
| Q |
147 |
tcatcattt-atctttttaaatattgtgtataa |
178 |
Q |
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|| |||||| ||||||||||||||||||||||| |
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| T |
40450797 |
tcttcatttaatctttttaaatattgtgtataa |
40450765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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