View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_low_10 (Length: 367)
Name: NF15521_low_10
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 13871434 - 13871765
Alignment:
| Q |
19 |
acactattggctcatttgcattatattctcttcaatacactttaaagaggttgaatcatcaaatgttactcttcccatagatagagattaatagtttgtt |
118 |
Q |
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| T |
13871434 |
acactattggcacatttgcattatattctcttcaatacactttaaagagtttgaatcatcaaatgttactcttcccatagataga--ttaatagtttgtt |
13871531 |
T |
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| Q |
119 |
tgttttacatcctacggctatactgacaagagtttgtggcaagccaannnnnnncgatgaagtccaatggtgccttgtacacaattagcgaaaattaatc |
218 |
Q |
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| T |
13871532 |
tgttttacatcctacggctataccgacaagagtttgtggcaagccaatttttttggatgaagtccaatggtgccttgtacacaattagcgaaaattaatc |
13871631 |
T |
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| Q |
219 |
taattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtctt-gaattggattggatgtgtttagtaacttcatttagtcattgcagccacc |
317 |
Q |
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| T |
13871632 |
taattggctcttaaacttgtgaagtctatcatatggaaag-aatggacttggacttggattggatgtgtttagtaacttcatgtagtcattgcagccacc |
13871730 |
T |
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| Q |
318 |
aatttcatcaccattgaaatgatttcccatatatc |
352 |
Q |
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| T |
13871731 |
aatttcatcaccattgaaatgatttcccacatatc |
13871765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 352
Target Start/End: Original strand, 13877965 - 13878123
Alignment:
| Q |
191 |
ccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaattggattggatgtgtttag |
290 |
Q |
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| T |
13877965 |
ccttgaacaaaattagggaaaattaatcgaa--ggctcttaaacttgtgaagtctataatatgaaaagaa-tggacttggattggattggatgtggtctg |
13878061 |
T |
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| Q |
291 |
taacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatc |
352 |
Q |
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| T |
13878062 |
taacttcatgaagtcattgcagccaccaatttcatcaccattgaattgatttcccacatatc |
13878123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 352
Target Start/End: Original strand, 13874148 - 13874313
Alignment:
| Q |
180 |
gtccaatggtgccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaattggattg |
279 |
Q |
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| T |
13874148 |
gtccaattgtgccttgaacaaaattagcgaaaattaatctaagta--tcttaaacttgtgtagtctatcatatgaaaagaaacg-----gactttgattg |
13874240 |
T |
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| Q |
280 |
gatgtgtttagtaacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatc |
352 |
Q |
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| T |
13874241 |
gatgtggtcagtaacttcatgcagtcactgcagccaccaatttcatcgtcattgaattgatttcccatatatc |
13874313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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