View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15521_low_11 (Length: 363)

Name: NF15521_low_11
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15521_low_11
NF15521_low_11
[»] chr2 (10 HSPs)
chr2 (1-347)||(11992923-11993269)
chr2 (266-347)||(37520607-37520688)
chr2 (267-347)||(1648024-1648104)
chr2 (267-347)||(16290759-16290839)
chr2 (267-347)||(8561069-8561149)
chr2 (271-326)||(23766906-23766961)
chr2 (271-326)||(23796099-23796154)
chr2 (270-345)||(45329643-45329718)
chr2 (62-141)||(12025933-12026012)
chr2 (11-53)||(3032157-3032199)
[»] chr1 (17 HSPs)
chr1 (267-347)||(52920995-52921075)
chr1 (267-345)||(4001864-4001942)
chr1 (267-343)||(32079325-32079401)
chr1 (267-347)||(49350472-49350552)
chr1 (267-349)||(51850775-51850857)
chr1 (270-347)||(9599924-9600001)
chr1 (267-347)||(49527436-49527516)
chr1 (267-340)||(8670806-8670879)
chr1 (267-347)||(1290191-1290271)
chr1 (267-347)||(6985614-6985692)
chr1 (267-332)||(52463088-52463153)
chr1 (267-337)||(6039612-6039682)
chr1 (273-347)||(52815024-52815098)
chr1 (267-322)||(15424510-15424565)
chr1 (267-332)||(47876948-47877014)
chr1 (267-332)||(19821951-19822016)
chr1 (267-300)||(48431711-48431744)
[»] chr6 (6 HSPs)
chr6 (267-347)||(6079591-6079671)
chr6 (268-347)||(20430569-20430648)
chr6 (272-323)||(22693196-22693247)
chr6 (275-326)||(26489378-26489429)
chr6 (267-332)||(2544929-2544994)
chr6 (274-318)||(6056338-6056382)
[»] chr5 (8 HSPs)
chr5 (267-347)||(2078539-2078619)
chr5 (268-347)||(39668781-39668860)
chr5 (268-326)||(3292667-3292725)
chr5 (267-345)||(11069364-11069442)
chr5 (267-332)||(32489132-32489197)
chr5 (268-332)||(22703827-22703891)
chr5 (279-347)||(10293688-10293756)
chr5 (268-308)||(6520932-6520972)
[»] chr3 (16 HSPs)
chr3 (267-347)||(31566260-31566340)
chr3 (267-347)||(51450765-51450845)
chr3 (269-347)||(52136331-52136409)
chr3 (267-347)||(7023163-7023243)
chr3 (273-342)||(9256280-9256349)
chr3 (267-324)||(580648-580705)
chr3 (268-349)||(27215623-27215704)
chr3 (86-128)||(23360171-23360213)
chr3 (86-128)||(23364992-23365034)
chr3 (86-128)||(23695470-23695512)
chr3 (86-128)||(23713910-23713952)
chr3 (86-128)||(23732366-23732408)
chr3 (86-128)||(23750821-23750863)
chr3 (274-320)||(28775146-28775192)
chr3 (285-318)||(49056974-49057007)
chr3 (271-315)||(21104213-21104257)
[»] chr8 (9 HSPs)
chr8 (269-347)||(16008440-16008518)
chr8 (274-347)||(4061825-4061898)
chr8 (269-350)||(35323884-35323965)
chr8 (267-347)||(35249793-35249877)
chr8 (267-337)||(15218282-15218352)
chr8 (276-347)||(29520507-29520578)
chr8 (272-331)||(3801865-3801924)
chr8 (267-347)||(30453850-30453931)
chr8 (274-326)||(2596178-2596230)
[»] scaffold0279 (1 HSPs)
scaffold0279 (267-347)||(18399-18479)
[»] scaffold0245 (1 HSPs)
scaffold0245 (267-347)||(16596-16676)
[»] scaffold0024 (1 HSPs)
scaffold0024 (267-347)||(48258-48338)
[»] scaffold0001 (1 HSPs)
scaffold0001 (267-331)||(440116-440180)
[»] chr7 (3 HSPs)
chr7 (278-322)||(36232115-36232159)
chr7 (267-332)||(46833166-46833228)
chr7 (278-332)||(30089121-30089175)
[»] chr4 (8 HSPs)
chr4 (267-331)||(38475065-38475129)
chr4 (270-347)||(54529560-54529636)
chr4 (267-346)||(27453165-27453242)
chr4 (267-347)||(16000246-16000322)
chr4 (267-332)||(883529-883594)
chr4 (270-325)||(55770388-55770443)
chr4 (270-325)||(55834644-55834699)
chr4 (268-310)||(16876208-16876250)
[»] scaffold0050 (1 HSPs)
scaffold0050 (291-332)||(70416-70457)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 11993269 - 11992923
Alignment:
Q  1 gaagatcgatttggtgccctcgagagaattaagaagctgaaacggaactaaatcatgggtgtttttaaagtttgatacattcaatgactataataacact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11993269 gaagatcgatttggtgccctcgagagaattaagaagctgaaacagaactaaatcatgggtgtttttaaagtttgatacattcaatgactataataacacg 11993170  T
Q  101 gcctcacacatttaagaaacaaaatgaccaattaccctatttggaacctcatcctcaaatgtgtataccgtgttggacactggaaccacttggtcctaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11993169 gcctcacacatttaagaaacaaaatgaccaattaccctatttggaacctcatcctcaaatgtgtataccgtgttggacactggaaccacttggtcctaag 11993070  T
Q  201 gtagtttaactgccaatttcttagaatgatgtagctccctcnnnnnnnnatttaattatcattatgccatgtcatagagattcgacaaagttttatgttg 300  Q
    |||| |||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11993069 gtaggttaactgccaatttcttagaatgaggtagctccctcttttttttatttaattatcattatgccatgtcatagagattcgacaaagttttatgttg 11992970  T
Q  301 gctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  11992969 gctgtcgaggcctaacacaaccctcttcttttacccgggcttgggac 11992923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 37520688 - 37520607
Alignment:
Q  266 gccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  37520688 gccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 37520607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 1648104 - 1648024
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1648104 ccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 1648024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 16290839 - 16290759
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||| ||||||||||||||    
T  16290839 ccatgtcatagagattcgacaaagttttacgttggctatcgaggcctaacacaaccctttccttttacccgggcttgggac 16290759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 8561069 - 8561149
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  8561069 ccatgtcatagggattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccaggcttgggac 8561149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 23766906 - 23766961
Alignment:
Q  271 gtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctct 326  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23766906 gtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctct 23766961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 23796099 - 23796154
Alignment:
Q  271 gtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctct 326  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23796099 gtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctct 23796154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 45329643 - 45329718
Alignment:
Q  270 tgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttggg 345  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||| | | ||||||||    
T  45329643 tgtcatagagattcgataaagttttacgttggctgtcgagacctaacacaaccctctccttttactcaggcttggg 45329718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 12026012 - 12025933
Alignment:
Q  62 tttttaaagtttgatacattcaatgactataataacactgcctcacacatttaagaaacaaaatgaccaattaccctatt 141  Q
    |||||||||||||||||| | || ||||||||| ||||| |||| |||||||||||| ||||| ||||| |||| |||||    
T  12026012 tttttaaagtttgatacacttaaggactataatgacacttcctcgcacatttaagaaccaaaacgaccatttactctatt 12025933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 3032157 - 3032199
Alignment:
Q  11 ttggtgccctcgagagaattaagaagctgaaacggaactaaat 53  Q
    |||||||||| ||||||||||||||||||||||| || |||||    
T  3032157 ttggtgcccttgagagaattaagaagctgaaacgaaattaaat 3032199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 52921075 - 52920995
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  52921075 ccatgtcatagagattcgacaaagttttatgttggctgtcaaggcctaacacaaccctctccttttacccgggcttgggac 52920995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 4001942 - 4001864
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttggg 345  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  4001942 ccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttggg 4001864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 32079401 - 32079325
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttg 343  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  32079401 ccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttg 32079325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 49350472 - 49350552
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  49350472 ccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacctgggcttgggac 49350552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 51850857 - 51850775
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggactg 349  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  51850857 ccatgtcatagagattcgacgaagttttatgttggatgtcgaggcctaacacaaccctctccttttacccaggcttgggactg 51850775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 9600001 - 9599924
Alignment:
Q  270 tgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  9600001 tgtcatagagatccgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgagcttgggac 9599924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 49527436 - 49527516
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||| |||| |||||||||    
T  49527436 ccatgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaatcctctccttttacccgagcttgggac 49527516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 8670806 - 8670879
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggc 340  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||    
T  8670806 ccatgttatagagattcgacaaagttttacattggctgtcgaggcctaacacaaccctctccttttacccgggc 8670879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 1290191 - 1290271
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||| | ||||||||| |||||||||| |||||| ||||||||||||| |||| ||||||||||||||    
T  1290191 ccatgtcatagagattctaaaaagttttacgttggctgtcaaggcctgacacaaccctctttttttacccgggcttgggac 1290271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 6985614 - 6985692
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||   |||||||||||||    
T  6985614 ccatgtcatagagattcgacaaagttttacgttggctgtc--ggcctaacacaaccctctcctttcatccgggcttgggac 6985692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 52463088 - 52463153
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||    
T  52463088 ccatgtcatagagattcgacaaagttttaagttggcagtcgaggtctaacacaaccctctcctttt 52463153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 6039682 - 6039612
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccg 337  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||| ||| ||||| ||||    
T  6039682 ccatgtcatagagattcaacaaagttttacgttggctgttgaggcctaatacaaccttctccttttacccg 6039612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 52815098 - 52815024
Alignment:
Q  273 catagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||| || ||||||||||| ||||| |||| ||||||||||||||||||| ||||| |||| | |||||||    
T  52815098 catagagagtcaacaaagttttacgttggttgtcaaggcctaacacaaccctctccttttacccgagtttgggac 52815024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 15424510 - 15424565
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaacc 322  Q
    |||||| ||||||||| |||||||||||| ||||| ||||| ||||||||||||||    
T  15424510 ccatgttatagagatttgacaaagttttacgttggttgtcgtggcctaacacaacc 15424565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 47877014 - 47876948
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcga-ggcctaacacaaccctcttctttt 332  Q
    ||||||||||||||||||||||| || | |||||||||||||  ||||||||||| ||||| |||||    
T  47877014 ccatgtcatagagattcgacaaatttctgtgttggctgtcgactgcctaacacaatcctctcctttt 47876948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 19822016 - 19821951
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    ||||||||||||||| ||||||| ||||   |||| ||| ||| |||||||||||||||| |||||    
T  19822016 ccatgtcatagagatacgacaaaattttgcattggttgttgagacctaacacaaccctctactttt 19821951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 48431744 - 48431711
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttg 300  Q
    ||||||||||||||||| ||||||||||||||||    
T  48431744 ccatgtcatagagattcaacaaagttttatgttg 48431711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 6079671 - 6079591
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  6079671 ccatgtcatagagattcgacaaagttttacgttgactgtcgaggcctaacgcaaccctctccttttacccgggcttgggac 6079591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 20430569 - 20430648
Alignment:
Q  268 catgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  20430569 catgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgagcttgggac 20430648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 22693247 - 22693196
Alignment:
Q  272 tcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccc 323  Q
    ||||| |||||||||||||||||| ||||| |||||| |||| |||||||||    
T  22693247 tcataaagattcgacaaagttttacgttggttgtcgaagcctgacacaaccc 22693196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 26489429 - 26489378
Alignment:
Q  275 tagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctct 326  Q
    ||||||| ||||||| ||||| ||||| |||||||| |||||||||||||||    
T  26489429 tagagatgcgacaaaattttacgttggttgtcgaggactaacacaaccctct 26489378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 2544929 - 2544994
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    |||||||||||| |||| ||||||||||| |||| ||||| | | ||||||||||| ||| |||||    
T  2544929 ccatgtcatagaaattccacaaagttttacgttgactgtcaatgtctaacacaaccttctcctttt 2544994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 6056338 - 6056382
Alignment:
Q  274 atagagattcgacaaagttttatgttggctgtcgaggcctaacac 318  Q
    ||||||||| || ||||||||| ||||||||||||| ||||||||    
T  6056338 atagagatttgataaagttttacgttggctgtcgagacctaacac 6056382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 2078539 - 2078619
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  2078539 ccatgtcatagagattcgacaaagttttactttggctgtcgaggcctaacacaaccctctccttttatccgggcttgggac 2078619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 39668781 - 39668860
Alignment:
Q  268 catgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||| ||||||||||||||    
T  39668781 catgtcatagagattcgacaaagttttacgttggctgtcgaggactaacacaaccctcaccttttacccgggcttgggac 39668860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 3292725 - 3292667
Alignment:
Q  268 catgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctct 326  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3292725 catgtcatagtgattcgacaaagttttatgttggctgttgaggcctaacacaaccctct 3292667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 11069364 - 11069442
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttggg 345  Q
    ||||||||||||||||||||||||||||  ||||| ||| ||||||||||||||| |||| ||||| ||||||||||||    
T  11069364 ccatgtcatagagattcgacaaagttttgcgttggttgttgaggcctaacacaacgctctccttttacccgggcttggg 11069442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 32489197 - 32489132
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||    
T  32489197 ccatgtcatagggattcgacaaagttttacgttgactgtcgaggtctaacacaaccctctcctttt 32489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 22703827 - 22703891
Alignment:
Q  268 catgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||    
T  22703827 catgttatagaaattcgacaaagttttgtgttggctgtcgaggtctaacacaaccctctcctttt 22703891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 10293688 - 10293756
Alignment:
Q  279 gattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||||| ||||| |||| | |||||||    
T  10293688 gattcgacaaagttttacgttgcatgtcgaggcctaacacaaccctctccttttacccgagtttgggac 10293756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 6520972 - 6520932
Alignment:
Q  268 catgtcatagagattcgacaaagttttatgttggctgtcga 308  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  6520972 catgtcatagagattcgacaaagttttacgttgactgtcga 6520932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 31566260 - 31566340
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  31566260 ccatgtcatagagattctacaaagttctacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 31566340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 51450765 - 51450845
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  51450765 ccatgccatagatattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 51450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 52136409 - 52136331
Alignment:
Q  269 atgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||| ||||||||||||||    
T  52136409 atgtcatagagattcgacaaagttttacgttggctatcaaggcctaacacaaccctctccttttacccgggcttgggac 52136331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 7023243 - 7023163
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||||| || ||||||||| ||||||||| |||||||||||||||||||| ||||| || |||||||||||    
T  7023243 ccatgtcatagagatttgataaagttttacgttggctgttgaggcctaacacaaccctctccttttacctgggcttgggac 7023163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 9256349 - 9256280
Alignment:
Q  273 catagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggctt 342  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||| |||| ||||    
T  9256349 catagagattcgacaaaattttacgttggctgttgaggcctaacacaaccctctccttttacccgagctt 9256280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 580705 - 580648
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccct 324  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||| || ||||||||    
T  580705 ccatgtcatagagatttgataaagttttatgttggctatcgatgcccaatacaaccct 580648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 27215623 - 27215704
Alignment:
Q  268 catgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggactg 349  Q
    |||||||||||||| | ||||||||||| ||||  | | ||||||| |||||||||||  ||||| ||||| ||||||||||    
T  27215623 catgtcatagagatacaacaaagttttacgttgcttattgaggcctgacacaaccctcaccttttacccggacttgggactg 27215704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23360171 - 23360213
Alignment:
Q  86 gactataataacactgcctcacacatttaagaaacaaaatgac 128  Q
    ||||||||||||| || |||||||||||||||| |||||||||    
T  23360171 gactataataacattgtctcacacatttaagaaccaaaatgac 23360213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23364992 - 23365034
Alignment:
Q  86 gactataataacactgcctcacacatttaagaaacaaaatgac 128  Q
    ||||||||||||| || |||||||||||||||| |||||||||    
T  23364992 gactataataacattgtctcacacatttaagaaccaaaatgac 23365034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23695470 - 23695512
Alignment:
Q  86 gactataataacactgcctcacacatttaagaaacaaaatgac 128  Q
    ||||||||||||| || |||||||||||||||| |||||||||    
T  23695470 gactataataacattgtctcacacatttaagaaccaaaatgac 23695512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23713910 - 23713952
Alignment:
Q  86 gactataataacactgcctcacacatttaagaaacaaaatgac 128  Q
    ||||||||||||| || |||||||||||||||| |||||||||    
T  23713910 gactataataacattgtctcacacatttaagaaccaaaatgac 23713952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23732366 - 23732408
Alignment:
Q  86 gactataataacactgcctcacacatttaagaaacaaaatgac 128  Q
    ||||||||||||| || |||||||||||||||| |||||||||    
T  23732366 gactataataacattgtctcacacatttaagaaccaaaatgac 23732408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23750821 - 23750863
Alignment:
Q  86 gactataataacactgcctcacacatttaagaaacaaaatgac 128  Q
    ||||||||||||| || |||||||||||||||| |||||||||    
T  23750821 gactataataacattgtctcacacatttaagaaccaaaatgac 23750863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 28775192 - 28775146
Alignment:
Q  274 atagagattcgacaaagttttatgttggctgtcgaggcctaacacaa 320  Q
    ||||| ||||||||||||| ||||||| ||||||||| |||||||||    
T  28775192 atagatattcgacaaagttatatgttgtctgtcgaggactaacacaa 28775146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 49057007 - 49056974
Alignment:
Q  285 acaaagttttatgttggctgtcgaggcctaacac 318  Q
    ||||||||||||||||| ||||||||||||||||    
T  49057007 acaaagttttatgttggttgtcgaggcctaacac 49056974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 21104213 - 21104257
Alignment:
Q  271 gtcatagagattcgacaaagttttatgttggctgtcgaggcctaa 315  Q
    ||||||||||||||||||| |||||  |||| |||||||||||||    
T  21104213 gtcatagagattcgacaaaattttacattggatgtcgaggcctaa 21104257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 269 - 347
Target Start/End: Original strand, 16008440 - 16008518
Alignment:
Q  269 atgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  16008440 atgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccaggcttgggac 16008518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 4061898 - 4061825
Alignment:
Q  274 atagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  4061898 atagagatttgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggtttgggac 4061825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 35323965 - 35323884
Alignment:
Q  269 atgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggactga 350  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||| || ||||||||||||||    
T  35323965 atgtcatagagattcgacaaaattttaagttggctgtcgaggcctgacccaaccgtcttcttttacctgggcttgggactga 35323884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 35249877 - 35249793
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttgg----ctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||| ||||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||| | ||||||||||||    
T  35249877 ccatgttatagagattcgacaaagttttatgttggttgtctgtcgaggcctatcacaaccctcttcttttacgcgggcttgggac 35249793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 15218282 - 15218352
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccg 337  Q
    ||||||||||||||||||||||| ||||| |||| || ||||||| |||||||||||||| ||||| ||||    
T  15218282 ccatgtcatagagattcgacaaaattttacgttgactatcgaggcttaacacaaccctctccttttacccg 15218352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 29520578 - 29520507
Alignment:
Q  276 agagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||| ||| ||| ||||||| ||||| ||| |||||||||||||||||||| ||||| ||||||||||||||    
T  29520578 agaggttcaacagagttttacgttggttgtagaggcctaacacaaccctctccttttacccgggcttgggac 29520507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 3801924 - 3801865
Alignment:
Q  272 tcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttt 331  Q
    |||||||||||| ||||||||||| ||||| ||||||| ||||||||| |||||| ||||    
T  3801924 tcatagagattcaacaaagttttacgttggttgtcgagacctaacacagccctctccttt 3801865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 30453850 - 30453931
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgag-gcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||| || ||||||||||| |||||||| ||||| |||| |  |||||||||||||||||  ||||  |||||||||||||    
T  30453850 ccatgacagagagattcgactaagttttacgttggttgtcaactgcctaacacaaccctctctttttatccgggcttgggac 30453931  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 2596230 - 2596178
Alignment:
Q  274 atagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctct 326  Q
    |||||||||||||||||||||||||||  |||  ||| || ||||||||||||    
T  2596230 atagagattcgacaaagttttatgttgattgttcaggtctgacacaaccctct 2596178  T

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Target: scaffold0279 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 18479 - 18399
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||||||||||||    
T  18479 ccatgtcatagagattcgacaaagttttacgttggttgtcgaggcttaacacaaccttctccttttacccgggcttgggac 18399  T

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Target: scaffold0245 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 16596 - 16676
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||| | ||||||||| |||||||||| |||||| ||||||||||||| |||| ||||||||||||||    
T  16596 ccatgtcatagagattctaaaaagttttacgttggctgtcaaggcctgacacaaccctctttttttacccgggcttgggac 16676  T

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Target: scaffold0024 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 48258 - 48338
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||| ||||| ||||| ||||||||    
T  48258 ccatgtcatagagattcgataaagttatatgttggctgtcgaggcctaacgaaaccctctccttttacccggacttgggac 48338  T

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Target: scaffold0001 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 440180 - 440116
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttt 331  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  440180 ccatgtcatagagatttgacaaagttttacgttggctgtcgaggcctaacacaatcctctccttt 440116  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 36232159 - 36232115
Alignment:
Q  278 agattcgacaaagttttatgttggctgtcgaggcctaacacaacc 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36232159 agattcgacaaagttttatgttggctgtcgaggcctaacacaacc 36232115  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 46833166 - 46833228
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    ||||||||||||||||||||||||||||| ||||   || |||||||||||||||||||| |||||    
T  46833166 ccatgtcatagagattcgacaaagttttacgttg---gttgaggcctaacacaaccctctcctttt 46833228  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 30089175 - 30089121
Alignment:
Q  278 agattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    |||||||||||||||||| ||| ||||||||| | ||| |||||||||| |||||    
T  30089175 agattcgacaaagttttacgttagctgtcgagacttaatacaaccctctcctttt 30089121  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 38475065 - 38475129
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttt 331  Q
    |||||||||||||||||||||| |||||| ||||||| | |||||||||||||| ||||||||||    
T  38475065 ccatgtcatagagattcgacaacgttttacgttggctattgaggcctaacacaagcctcttcttt 38475129  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 54529636 - 54529560
Alignment:
Q  270 tgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||  |||| ||| | ||||||||    
T  54529636 tgtcatag-gattcgacaaagtgttacgttggctgtcgaggcctaacacaaccctctctttttacccagccttgggac 54529560  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 27453165 - 27453242
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttggga 346  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| ||  ||||| | |||||||||||    
T  27453165 ccatgtcatagagattcggcaaagttttacgttggctgtcgaggcataacataaccttc--cttttactcgggcttggga 27453242  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 16000322 - 16000246
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttccccgggcttgggac 347  Q
    |||||||||||||| || ||||||||||| |||| ||||||||    ||||||||||||| ||||| ||||| ||||||||    
T  16000322 ccatgtcatagagactcaacaaagttttacgttgactgtcgag----aacacaaccctctccttttacccggacttgggac 16000246  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 883529 - 883594
Alignment:
Q  267 ccatgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    ||||||||||||||||||| ||||| |||||||  ||||  |||||||||||||| |||| |||||    
T  883529 ccatgtcatagagattcgataaagtattatgtttactgtgaaggcctaacacaactctctgctttt 883594  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 55770388 - 55770443
Alignment:
Q  270 tgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctc 325  Q
    ||||||||||||| ||||||||||||||||   |||| ||| ||||||||||||||    
T  55770388 tgtcatagagattggacaaagttttatgttttttgtcaaggtctaacacaaccctc 55770443  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 55834644 - 55834699
Alignment:
Q  270 tgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctc 325  Q
    ||||||||||||| ||||||||||||||||   |||| ||| ||||||||||||||    
T  55834644 tgtcatagagattggacaaagttttatgttttttgtcaaggtctaacacaaccctc 55834699  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 16876250 - 16876208
Alignment:
Q  268 catgtcatagagattcgacaaagttttatgttggctgtcgagg 310  Q
    |||||||||||||||||| | ||||||||||||| ||||||||    
T  16876250 catgtcatagagattcgatagagttttatgttggttgtcgagg 16876208  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 70457 - 70416
Alignment:
Q  291 ttttatgttggctgtcgaggcctaacacaaccctcttctttt 332  Q
    ||||||||| |||||||||||||||||||| ||||| |||||    
T  70457 ttttatgttagctgtcgaggcctaacacaatcctctcctttt 70416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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