View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15521_low_13 (Length: 322)

Name: NF15521_low_13
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15521_low_13
NF15521_low_13
[»] chr5 (9 HSPs)
chr5 (260-311)||(11246476-11246527)
chr5 (260-311)||(29561710-29561761)
chr5 (264-309)||(37986853-37986898)
chr5 (259-303)||(41539384-41539428)
chr5 (260-303)||(22687863-22687906)
chr5 (260-299)||(27095518-27095557)
chr5 (270-303)||(36116871-36116904)
chr5 (264-309)||(38040329-38040374)
chr5 (259-303)||(31556888-31556932)
[»] chr2 (9 HSPs)
chr2 (260-303)||(34107344-34107387)
chr2 (260-303)||(1244639-1244682)
chr2 (260-303)||(35352386-35352429)
chr2 (260-311)||(39334863-39334914)
chr2 (272-311)||(45314472-45314511)
chr2 (260-303)||(36345163-36345206)
chr2 (260-302)||(20942091-20942133)
chr2 (264-309)||(30737045-30737090)
chr2 (264-300)||(12206571-12206607)
[»] chr4 (9 HSPs)
chr4 (260-302)||(12585541-12585583)
chr4 (260-302)||(54854161-54854203)
chr4 (260-309)||(20610803-20610852)
chr4 (264-311)||(27921958-27922005)
chr4 (260-303)||(32887201-32887244)
chr4 (264-303)||(33359887-33359926)
chr4 (264-303)||(49039431-49039470)
chr4 (265-301)||(6202675-6202711)
chr4 (260-311)||(39293590-39293642)
[»] chr8 (12 HSPs)
chr8 (259-303)||(11900635-11900679)
chr8 (260-302)||(12926460-12926502)
chr8 (264-309)||(14011024-14011069)
chr8 (260-303)||(220344-220387)
chr8 (260-303)||(689499-689542)
chr8 (260-303)||(733967-734010)
chr8 (260-303)||(857863-857906)
chr8 (264-303)||(6372590-6372629)
chr8 (260-302)||(39208851-39208893)
chr8 (263-303)||(6325339-6325379)
chr8 (272-308)||(26773696-26773732)
chr8 (265-301)||(44254299-44254335)
[»] scaffold0129 (1 HSPs)
scaffold0129 (260-303)||(7126-7169)
[»] chr3 (5 HSPs)
chr3 (260-303)||(21248972-21249015)
chr3 (260-309)||(4478350-4478399)
chr3 (259-302)||(6054206-6054249)
chr3 (260-301)||(38571404-38571445)
chr3 (260-303)||(36763501-36763545)
[»] chr1 (13 HSPs)
chr1 (260-303)||(23973464-23973507)
chr1 (260-302)||(9163354-9163395)
chr1 (263-311)||(3261920-3261968)
chr1 (264-303)||(3341722-3341761)
chr1 (260-303)||(13941389-13941432)
chr1 (264-303)||(23750220-23750259)
chr1 (264-303)||(41677130-41677169)
chr1 (268-303)||(48260179-48260214)
chr1 (260-310)||(8758351-8758401)
chr1 (265-303)||(9976371-9976409)
chr1 (269-303)||(11238019-11238053)
chr1 (265-303)||(16182879-16182917)
chr1 (265-303)||(43020681-43020719)
[»] chr7 (10 HSPs)
chr7 (259-311)||(8903776-8903828)
chr7 (259-303)||(26734252-26734296)
chr7 (264-303)||(10020455-10020494)
chr7 (260-299)||(32309130-32309169)
chr7 (260-309)||(23470483-23470532)
chr7 (259-303)||(1649222-1649266)
chr7 (263-303)||(3955030-3955070)
chr7 (259-303)||(7162649-7162693)
chr7 (259-299)||(38363233-38363273)
chr7 (260-308)||(41000825-41000873)
[»] scaffold0119 (1 HSPs)
scaffold0119 (260-303)||(1109-1152)
[»] chr6 (4 HSPs)
chr6 (260-303)||(26669641-26669684)
chr6 (260-302)||(4844214-4844256)
chr6 (266-302)||(1395578-1395614)
chr6 (259-303)||(24256986-24257030)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 11246476 - 11246527
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 311  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  11246476 tagtctagtggctagaattcacctttttcaagctgaataagtgggatgtctg 11246527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 29561761 - 29561710
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 311  Q
    |||| |||||| |||||||||| ||||||||||||||||||||| |||||||    
T  29561761 tagtttagtggttagaattcacctttttcaagatgaataagtgggatgtctg 29561710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 37986853 - 37986898
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 309  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||    
T  37986853 ctagtggctagaattcacctttttcaaggtgaataagtgggatgtc 37986898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 41539428 - 41539384
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||    
T  41539428 atagtctagtgactagaattcacctttttcaagattaataagtgg 41539384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 22687863 - 22687906
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  22687863 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 22687906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 27095518 - 27095557
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataa 299  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  27095518 tagtctagtggctagaattcacattttttcagatgaataa 27095557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 36116871 - 36116904
Alignment:
Q  270 gctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||| |||||||||||||||    
T  36116871 gctagaattcacatttttgaagatgaataagtgg 36116904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 38040374 - 38040329
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 309  Q
    |||||| ||| ||||||| ||||||||||||||||||||| |||||    
T  38040374 ctagtgactataattcacctttttcaagatgaataagtgggatgtc 38040329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 31556932 - 31556888
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| ||||||||||||||||||  |||||||| |||||||||||    
T  31556932 atagcctagtggctagaattcacccttttcaaggtgaataagtgg 31556888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 34107387 - 34107344
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  34107387 tagtctagtggctagaattcacatttttcaaggtgaataagtgg 34107344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 1244682 - 1244639
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||||||| ||||||||| |||||||||||    
T  1244682 tagtctagtggctagaattcacctttttcaaggtgaataagtgg 1244639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 35352386 - 35352429
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  35352386 tagtctagtgactagaattcacatttttcaaggtgaataagtgg 35352429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 39334863 - 39334914
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 311  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| |||||||    
T  39334863 tagtctagtggctagaattcacctttttcaaagtgaataagtgggatgtctg 39334914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 45314511 - 45314472
Alignment:
Q  272 tagaattcacatttttcaagatgaataagtggtatgtctg 311  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  45314511 tagaattcacatttttcaagatgaataagtgggatgtctg 45314472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 36345163 - 36345206
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| |||||||||||| |||| |||||||||||||||||||||    
T  36345163 tagtttagtggctagaactcacctttttcaagatgaataagtgg 36345206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 20942091 - 20942133
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||    
T  20942091 tagtctagtgactagaattcacttttttcaaggtgaataagtg 20942133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 30737090 - 30737045
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 309  Q
    |||||| ||||||||||||||||| ||| ||||||||||| |||||    
T  30737090 ctagtgactagaattcacattttttaaggtgaataagtgggatgtc 30737045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 12206607 - 12206571
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataag 300  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  12206607 ctagtggctagaattcacctttttcaaggtgaataag 12206571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 12585541 - 12585583
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  12585541 tagtctagtggctagaattcacctttttcaagatgaataagtg 12585583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 54854161 - 54854203
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  54854161 tagtctagtggctagaattcacttttttcaaggtgaataagtg 54854203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 20610852 - 20610803
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtc 309  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||| |||||    
T  20610852 tagtctagtggctagaattcaccttttttaaggtgaataagtgggatgtc 20610803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 27922005 - 27921958
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 311  Q
    ||||||| |||||||||||||||| ||||||||||||||  |||||||    
T  27922005 ctagtggttagaattcacattttttaagatgaataagtgagatgtctg 27921958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 32887244 - 32887201
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||    
T  32887244 tagtcttgtggctaaaattcacatttttcaagattaataagtgg 32887201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 33359926 - 33359887
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  33359926 ctagtggctagaattcacctttttcaaggtgaataagtgg 33359887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 49039431 - 49039470
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  49039431 ctagtggctagaattcacctttttcaaggtgaataagtgg 49039470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 6202711 - 6202675
Alignment:
Q  265 tagtggctagaattcacatttttcaagatgaataagt 301  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  6202711 tagtgactagaattcacctttttcaagatgaataagt 6202675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 39293642 - 39293590
Alignment:
Q  260 tagtctagtggctagaattcacattttt-caagatgaataagtggtatgtctg 311  Q
    ||||||||| |||||||||||| ||||| |||| ||||||||||| |||||||    
T  39293642 tagtctagtagctagaattcaccttttttcaaggtgaataagtgggatgtctg 39293590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 11900679 - 11900635
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||    
T  11900679 atagtttagtggctagaattcacctttttcaagatgaataagtgg 11900635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 12926460 - 12926502
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  12926460 tagtctagtggctagaatttacctttttcaagatgaataagtg 12926502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 14011024 - 14011069
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 309  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||    
T  14011024 ctagtggttagaattcacattttttaagatgaataagtgggatgtc 14011069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 220344 - 220387
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  220344 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 220387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 689499 - 689542
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  689499 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 689542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 733967 - 734010
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  733967 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 734010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 857863 - 857906
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  857863 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 857906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 6372590 - 6372629
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  6372590 ctagtggcaagaattcacatttttcaatatgaataagtgg 6372629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 39208851 - 39208893
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||    
T  39208851 tagtctagtggctagaattcacctttttaaaggtgaataagtg 39208893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 6325379 - 6325339
Alignment:
Q  263 tctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  6325379 tctagtggctagaattcacctttttcaaggtgaatgagtgg 6325339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 26773696 - 26773732
Alignment:
Q  272 tagaattcacatttttcaagatgaataagtggtatgt 308  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  26773696 tagaattcacattttttaagatgaataagtggaatgt 26773732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 44254299 - 44254335
Alignment:
Q  265 tagtggctagaattcacatttttcaagatgaataagt 301  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  44254299 tagtggctaaaattcacatttttcaaggtgaataagt 44254335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 7169 - 7126
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  7169 tagtcaagtggctagaattcacctttttcaagatgaataagtgg 7126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 21248972 - 21249015
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||||||| ||||||||| |||||||||||    
T  21248972 tagtctagtggctagaattcacctttttcaaggtgaataagtgg 21249015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 4478350 - 4478399
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtc 309  Q
    |||||||||||||| |||| |||||||| ||||||||||||||| |||||    
T  4478350 tagtctagtggctaaaatttacatttttaaagatgaataagtgggatgtc 4478399  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 6054206 - 6054249
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||    
T  6054206 atagtctagtggttagaattcacctttttcaaggtgaataagtg 6054249  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 38571404 - 38571445
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagt 301  Q
    ||||||||||||||||||||||  |||||||| |||||||||    
T  38571404 tagtctagtggctagaattcaccattttcaaggtgaataagt 38571445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 36763545 - 36763501
Alignment:
Q  260 tagtctagtggctagaa-ttcacatttttcaagatgaataagtgg 303  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||    
T  36763545 tagtctagtggctagaaattcacctttttaaagatgaataagtgg 36763501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 23973464 - 23973507
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  23973464 tagtctagtggctagaattcacatttttcaacgtgaataagtgg 23973507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 9163395 - 9163354
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9163395 tagtctagtggctagaattcacattttt-aagatgaataagtg 9163354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 3261968 - 3261920
Alignment:
Q  263 tctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 311  Q
    |||| ||| |||||||||||||||||||| ||||||||||| |||||||    
T  3261968 tctactggttagaattcacatttttcaaggtgaataagtggaatgtctg 3261920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 3341722 - 3341761
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  3341722 ctagtggctagaattcacctttttcaaggtgaataagtgg 3341761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 13941432 - 13941389
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| |||||| |||||||||| |||||||||||||||||||||    
T  13941432 tagtttagtggttagaattcacttttttcaagatgaataagtgg 13941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 23750259 - 23750220
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  23750259 ctagtggttagaattcacctttttcaagatgaataagtgg 23750220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 41677169 - 41677130
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  41677169 ctagtggctagaattcacctttttcaaggtgaataagtgg 41677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 48260179 - 48260214
Alignment:
Q  268 tggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||||||||||||||||||||| |||||||||||    
T  48260179 tggctagaattcacatttttcaaggtgaataagtgg 48260214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 8758351 - 8758401
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtct 310  Q
    ||||||| ||| ||||||||||||||| || ||||||||||||| ||||||    
T  8758351 tagtctaatggttagaattcacattttccatgatgaataagtgggatgtct 8758401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 9976371 - 9976409
Alignment:
Q  265 tagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  9976371 tagtggctagaattcacttttttcaaggtgaataagtgg 9976409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 11238019 - 11238053
Alignment:
Q  269 ggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||||| |||||||||||||||||||||    
T  11238019 ggctagaattcacctttttcaagatgaataagtgg 11238053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 16182917 - 16182879
Alignment:
Q  265 tagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  16182917 tagtggttagaattcatatttttcaagatgaataagtgg 16182879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 43020719 - 43020681
Alignment:
Q  265 tagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  43020719 tagtggctagaattcacatttttcaaggtgaatgagtgg 43020681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 8903776 - 8903828
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 311  Q
    ||||||||||| ||||||||||| || ||||||||||||||||| | ||||||    
T  8903776 atagtctagtgactagaattcactttattcaagatgaataagtgatgtgtctg 8903828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 26734252 - 26734296
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||    
T  26734252 atagcctagtggctagaattcacctttttcaaggtgaataagtgg 26734296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 10020455 - 10020494
Alignment:
Q  264 ctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  10020455 ctagtgggtagaattcacctttttcaagatgaataagtgg 10020494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 32309130 - 32309169
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataa 299  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  32309130 tagtctagtggctagaattcacattttttaaggtgaataa 32309169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 23470483 - 23470532
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtc 309  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||| |||||    
T  23470483 tagtctagtggttagaactcacctttttcaagatgaataaatgggatgtc 23470532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 1649266 - 1649222
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| ||||||||||||||||||  |||||||| |||||||||||    
T  1649266 atagcctagtggctagaattcaccattttcaaggtgaataagtgg 1649222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 3955030 - 3955070
Alignment:
Q  263 tctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| |||||| ||||||||||||| |||||||||||||||    
T  3955030 tctaatggctaaaattcacattttttaagatgaataagtgg 3955070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 7162649 - 7162693
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||    
T  7162649 atagcctagtagttagaattcacctttttcaagatgaataagtgg 7162693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 38363273 - 38363233
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataa 299  Q
    |||||||||||| |||||||||| ||||| |||||||||||    
T  38363273 atagtctagtggttagaattcaccttttttaagatgaataa 38363233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 41000873 - 41000825
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgt 308  Q
    |||||| |||| |||||||||||||||| ||| ||||||||||| ||||    
T  41000873 tagtctggtggttagaattcacattttttaaggtgaataagtgggatgt 41000825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 1152 - 1109
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||    
T  1152 tagtttagtggctagaattcacctttttcaaggtgaataagtgg 1109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 26669641 - 26669684
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||    
T  26669641 tagtttagtggctagaattcacctttttcaaggtgaataagtgg 26669684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 4844256 - 4844214
Alignment:
Q  260 tagtctagtggctagaattcacatttttcaagatgaataagtg 302  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||    
T  4844256 tagtctagtggttagaattcacttttttcaaggtgaataagtg 4844214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 1395578 - 1395614
Alignment:
Q  266 agtggctagaattcacatttttcaagatgaataagtg 302  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  1395578 agtggctagaattcacctttttcaaggtgaataagtg 1395614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 24257030 - 24256986
Alignment:
Q  259 atagtctagtggctagaattcacatttttcaagatgaataagtgg 303  Q
    |||| ||||||||||||||| || ||||||||| |||||||||||    
T  24257030 atagcctagtggctagaatttacttttttcaaggtgaataagtgg 24256986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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