View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15521_low_15 (Length: 305)
Name: NF15521_low_15
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 289
Target Start/End: Original strand, 41653155 - 41653301
Alignment:
| Q |
143 |
ggtaataattagctgaaaacaatgatttagccaattaattaattaccaacattcgtacaagttaatctccgcacgaagcctaaaataaacttcaccttca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653155 |
ggtaataattagctgaaaacaatgatttagccaattaattaattaccaacattcgtacaagttaatctccgcacgaagcctaaaataaacttcaccttca |
41653254 |
T |
|
| Q |
243 |
aatgaatctgttgaaagagtagccactcccctagtcatgaagaaatc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653255 |
aatgaatctgttgaaagagtagccactcccctagtcatgaagaaatc |
41653301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41652995 - 41653074
Alignment:
| Q |
1 |
atttaattaacttcaccaaacaaaacttcacacataatgttaaatgcgaagtattattcatttttgaataaaggctccaca |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
41652995 |
atttaattaacttcaccaaacaaaacttcacacataatgttaaatgcgaagcattattcaattttgaat-aaggctccaca |
41653074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University