View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15521_low_16 (Length: 295)
Name: NF15521_low_16
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 28935637 - 28935356
Alignment:
| Q |
1 |
tatcattttatgctaatggactccccatctaaccagcataaggccattttttctctttaaggctatataacaatacttcctttctttttcactcctatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28935637 |
tatcattttatgctaatggactccccatctaaccagcataaggccattttttctctttaaggctatataacaatacttcctttctttttcactcctatca |
28935538 |
T |
|
| Q |
101 |
tgttcaccaagcacagcatataatccaaagtttaacataaaaaatttattttatccctttcaaaatgactgccgattaaaaaattgattttgttagttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28935537 |
tgttcaccaagcacagcatataatccaaagtttaacataaaaaatttattttatccctttcaaaatgactgccgattaaaaaattgattttgttagttag |
28935438 |
T |
|
| Q |
201 |
gaccttaaacgatattttgggtccaaggtgtggaaagttaatgctagcaagggccagagtgaaaaaatattgatgttgcaga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28935437 |
gaccttaaacgatattttgggtccaaggtgtggaaagttaatgctagcaagggccagagtgaaaaaatattgatgttgcaga |
28935356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University