View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_low_19 (Length: 250)
Name: NF15521_low_19
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6126908 - 6127136
Alignment:
| Q |
1 |
tgtctctgtccatgcctctctttagaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgatt |
100 |
Q |
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| T |
6126908 |
tgtctctgtccatgcctctctttagaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgatt |
6127007 |
T |
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| Q |
101 |
cttcaacatgtcctcatattcgtttggagtatgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtga |
200 |
Q |
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| T |
6127008 |
cttcaacatgtcctcatattcgtttggagtatgattgtttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtga |
6127107 |
T |
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| Q |
201 |
cttaccaaggtacacattcattaaacttt |
229 |
Q |
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| T |
6127108 |
cttaccaaggtacacattcattaaacttt |
6127136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 6135985 - 6136181
Alignment:
| Q |
16 |
ctctctttagaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctc |
115 |
Q |
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| T |
6135985 |
ctctctttgaaagaaactaatggagaaagttgcaatttatatgaagggagttgggtgtatgatgaatcatatcctctttatgattcttcaacatgtcctc |
6136084 |
T |
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| Q |
116 |
atattcgtttggagtatgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttaccaaggta |
212 |
Q |
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| T |
6136085 |
atgttcgtgaggagttaaattgcttgaagtatggtcgtcttgataagcaatacctcaaatatagatggcaaccaagcaattgtaacttaccaaggta |
6136181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 13286658 - 13286462
Alignment:
| Q |
16 |
ctctctttagaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctc |
115 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| |||| |
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| T |
13286658 |
ctctctttggaagaaactaatggagaaagttgcaatttatatgaagggagttgggtgtatgatgaatcatatcctctttatgattcttcaacatgccctc |
13286559 |
T |
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| Q |
116 |
atattcgtttggagtatgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttaccaaggta |
212 |
Q |
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| T |
13286558 |
atgttcgtgaggagttaaattgcttgaagtatggtcgtcttgataagcaatacctcaaatatagatggcaaccaagcaattgtaacttaccaaggta |
13286462 |
T |
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