View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15521_low_20 (Length: 250)
Name: NF15521_low_20
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_20 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41652803 - 41652567
Alignment:
| Q |
1 |
tagtacaagataattacgtccttgctagcaaatggacaatactataattgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaaatgaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41652803 |
tagtacaagataattatgtccttgctagcaaatggacaatactataattgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaagtgaa |
41652704 |
T |
|
| Q |
101 |
attttgcaaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaaccacatacttgcaatcaagttcgataaacacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41652703 |
gttttgcaaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaaccacatacttgcaatcaagttcgataaacacct |
41652604 |
T |
|
| Q |
201 |
tagataaacatatattgtcaagtcattttattgcttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41652603 |
tagataaacatatattgtcaagtcattttattgcttc |
41652567 |
T |
|
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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 26917482 - 26917285
Alignment:
| Q |
7 |
aagataattacgtccttgctagcaaatggacaatactataattgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaaatgaaattttg |
106 |
Q |
| |
|
|||||||| ||| ||||||||| | |||| ||| ||||| |||||||| ||| ||| ||| ||||||||||||||| |||| |||||| |||| |||| |
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|
| T |
26917482 |
aagataatgacgcccttgctagtagatgggcaacactat--ttgcttgtctcctaataaaacttatcttaaagtttttgtagattctaagtgaagctttg |
26917385 |
T |
|
| Q |
107 |
caaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaaccacatacttgcaatcaagttcgataaacaccttagata |
206 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | ||||||||| ||||| || |||||||||||| | ||||||||||||||||||| ||| |||||||| |
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|
| T |
26917384 |
caaatatcaagaatagcgtcaaacattgaattgttgttgagtcccctagctatgccgtcaaccacttgcttgcaatcaagttcgatagacatcttagata |
26917285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 34944361 - 34944417
Alignment:
| Q |
175 |
cttgcaatcaagttcgataaacaccttagataaacatatattgtcaagtcattttat |
231 |
Q |
| |
|
|||||||| |||||||||| ||| |||| |||||| ||||||||||| |||||||| |
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|
| T |
34944361 |
cttgcaattaagttcgatagacatcttacataaacccatattgtcaagccattttat |
34944417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 237
Target Start/End: Complemental strand, 43381919 - 43381760
Alignment:
| Q |
78 |
agttttggtaggttctaaatgaaattttgcaaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaaccacatactt |
177 |
Q |
| |
|
||||||| |||||| ||| |||| || | |||||||||||||||||| ||||||| ||| | |||||||||||| || ||| ||||||||||| | ||| |
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|
| T |
43381919 |
agttttgataggttttaagtgaagttgttcaaatatcaataatagcgtcaaacatggaattggtgttgagtctcttaattataccgtcaaccacttgctt |
43381820 |
T |
|
| Q |
178 |
gcaatcaagttcgataaacaccttagataaacatatattgtcaagtcattttattgcttc |
237 |
Q |
| |
|
|||||||||||||||| |||| ||||||| || ||||||||||||||| ||||| ||||| |
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|
| T |
43381819 |
gcaatcaagttcgatagacactttagatagacctatattgtcaagtcactttatcgcttc |
43381760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 24588614 - 24588743
Alignment:
| Q |
77 |
aagttttggtaggttctaaatgaaattttgcaaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaaccacatact |
176 |
Q |
| |
|
|||||||| ||| |||||| |||| ||| |||||||||| ||||||||||||||| ||| | |||||||||| |||||||| | |||||||||| | || |
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|
| T |
24588614 |
aagttttgttagattctaagtgaagctttacaaatatcaagaatagcgccaaacatggaattggtgttgagtcccctagttatgtcgtcaaccacttgct |
24588713 |
T |
|
| Q |
177 |
tgcaatcaagttcgataaacaccttagata |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
24588714 |
tgcaatcaagttcgatagacaccttagata |
24588743 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 19920891 - 19920694
Alignment:
| Q |
7 |
aagataattacgtccttgctagcaaatggacaatactataattgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaaatgaaattttg |
106 |
Q |
| |
|
|||||||| |||||||||||| ||||||| || ||||| |||||||||||| ||||||| || |||||||||||| ||| |||||| ||| ||||| |
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|
| T |
19920891 |
aagataatgacgtccttgctaacaaatggcaaacactat--ttgcttgtttcctaatgaaacctagcttaaagttttgatagattctaagtgatgttttg |
19920794 |
T |
|
| Q |
107 |
caaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaaccacatacttgcaatcaagttcgataaacaccttagata |
206 |
Q |
| |
|
||||||||| | ||||| || ||| | ||| | |||||||||| ||||||| | || ||||| | ||||||||||||||| ||| |||||||||||| |
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|
| T |
19920793 |
caaatatcattgatagcaccgaacgtggaattgatgttgagtcttctagttatgtagtgaaccatttgcttgcaatcaagttcaatagacaccttagata |
19920694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 9227259 - 9227400
Alignment:
| Q |
62 |
atgaaatttatcttaaagttttggtaggttctaaatgaaattttgcaaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagc |
161 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||| |||| |||||| ||||||||||| |||||| |||| | || |||||||| |||||| || |
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|
| T |
9227259 |
atgaaacttatcttaaagttttgatagattctaaatgaagttttacaaatagcaataatagcgtcaaaca-tgaaattgtattgagtcttctagttgtgc |
9227357 |
T |
|
| Q |
162 |
cgtcaaccaca--tacttgcaatcaagttcgataaacacctta |
202 |
Q |
| |
|
| || | |||| | ||||||||||||||||||| |||||||| |
|
|
| T |
9227358 |
cttccagcacatttgcttgcaatcaagttcgatagacacctta |
9227400 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 13923062 - 13922916
Alignment:
| Q |
48 |
ttgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaaatgaaattttgcaaatatcaataatagcgccaaacattgaactagtgttgag |
147 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| |||||| |||| ||| ||||||| || || | ||| |||||| || |||||||||| |
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|
| T |
13923062 |
ttgcttgtttcctaatgaaacttatcttaaagttttggtagattctaagtgaagctttacaaatataaagaacaacgcaaaacatcgagttagtgttgag |
13922963 |
T |
|
| Q |
148 |
tctcctagttaagccg-tcaaccacatacttgcaatcaagttcgata |
193 |
Q |
| |
|
|||||||| | | | |||||||| |||||| |||||||||||||| |
|
|
| T |
13922962 |
tctcctaggaatgtggttcaaccacttacttgaaatcaagttcgata |
13922916 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 8295142 - 8295005
Alignment:
| Q |
69 |
ttatcttaaagttttggtaggttctaaatgaaattttgcaaatatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaac |
168 |
Q |
| |
|
||||||||||||||||| || |||||| |||| |||||||||||||| || | |||||||||| || | ||||||||| || || || ||||| || |
|
|
| T |
8295142 |
ttatcttaaagttttggcagattctaagtgaagctttgcaaatatcaagaacaacgccaaacatgaaattgatgttgagtccccaagctatgccgtaaat |
8295043 |
T |
|
| Q |
169 |
cacatacttgcaatcaagttcgataaacaccttagata |
206 |
Q |
| |
|
||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
8295042 |
cacttgcttgcaatcaagttcgatagacaccttagata |
8295005 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 35051653 - 35051843
Alignment:
| Q |
10 |
ataattacgtccttgctagcaaatggacaatactataattgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaaatgaaattttgcaa |
109 |
Q |
| |
|
||||| ||||| |||||| ||||||| ||||| ||| || ||||| | | ||||||| || |||||||||||||||||||||||| |||| |||| ||| |
|
|
| T |
35051653 |
ataatgacgtcattgctaacaaatggccaatattat--tttcttgtcttctaatgaaacttttcttaaagttttggtaggttctaactgaagtttttcaa |
35051750 |
T |
|
| Q |
110 |
atatcaataatagcgccaaacattgaactagtgttgagtctcctagttaagccgtcaaccacatacttgcaatcaagttcgataaacacctta |
202 |
Q |
| |
|
||||||||||| ||| ||||| | || | ||||||||||||||||||| | ||||||||| | |||| ||||||||| |||| |||||||| |
|
|
| T |
35051751 |
atatcaataattgcgtcaaacttgaaattggtgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagtttgatagacacctta |
35051843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 5460967 - 5460861
Alignment:
| Q |
48 |
ttgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaaatgaaattttgcaaatatcaataatagcgccaaacattgaactagtgttgag |
147 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||||||| |||| || ||| ||||||| | || | ||||||||| ||||| ||| | |||||||| |
|
|
| T |
5460967 |
ttgcttgtctcctaatgaaacttatcttaaagttttggtaaattctcaaggaagctttgcaagtctctagaatagcgccgaacatggaattggtgttgag |
5460868 |
T |
|
| Q |
148 |
tctccta |
154 |
Q |
| |
|
| ||||| |
|
|
| T |
5460867 |
tttccta |
5460861 |
T |
|
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