View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_low_3 (Length: 443)
Name: NF15521_low_3
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 21 - 430
Target Start/End: Complemental strand, 51418379 - 51417972
Alignment:
| Q |
21 |
atcctgcataactctatgactcttagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctcactttctcaattaccaccgttggttgt |
120 |
Q |
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| T |
51418379 |
atcctgcataactctatgactcttagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctcactttctcaattaccaccgttggttgt |
51418280 |
T |
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| Q |
121 |
ttatccatgcatgtaatgtctgtaacattgttagggagacaccactctgtttctgtgtctagtttcattaatgattagcaatttatgggagagaaagaac |
220 |
Q |
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| T |
51418279 |
ttatccatgcatgtaatgtctgtaacattgttagggagacaccaatctgtttctgtgtctagtttcattaatgattagcaatttatgggagagaaagaac |
51418180 |
T |
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| Q |
221 |
agcaaaattgtaacaaaggcaatgggattattggttaagatctgtgttagttttgtgagggaagacttgtgagttatactcctatgaatttaaaggaaag |
320 |
Q |
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| T |
51418179 |
agcaaaattgtaacaaaggcaatgggattattggttaagatctgtgttagttttgtgagggaagacttgtgagt--tactcctatgaatttaaaggaaag |
51418082 |
T |
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| Q |
321 |
aaaaagttaggacaagggcaaagaaagagagagaatgttggtttgatttgatgttgctgttttggatattgaagaatattgataggtagctatagtagtg |
420 |
Q |
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| T |
51418081 |
aaaaagttaggacaagggcaaagaaagagagagaatgttggtttgatttgatgttgctgttttggatattgaagaatattgttaggtagctatagtagtg |
51417982 |
T |
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| Q |
421 |
aagtataatc |
430 |
Q |
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| T |
51417981 |
aagtataatc |
51417972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 51413308 - 51413158
Alignment:
| Q |
39 |
actcttagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctcactttctcaattaccaccgttggttgtttatccatgcatgtaatg |
138 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
51413308 |
actcttagagacaccgttttgtaacatgaaacctagtaaacgcaccgttttgctcaatttctcaatcaccaccgttggttggttatccatgcatgtaatg |
51413209 |
T |
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| Q |
139 |
tctgtaacattgttagggagacaccactctgtttctgtgtctagtttcatt |
189 |
Q |
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||||| ||||| ||||||||||| |||||||||||||| | ||||||||| |
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| T |
51413208 |
tctgtcacattattagggagacagcactctgtttctgtatgaagtttcatt |
51413158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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