View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_low_6 (Length: 400)
Name: NF15521_low_6
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 44110317 - 44109933
Alignment:
| Q |
15 |
aatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttattaaagttag |
114 |
Q |
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| T |
44110317 |
aatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttattaaagttag |
44110218 |
T |
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| Q |
115 |
acaagaaaattcaattcctactnnnnnnnntatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgccaggttcttc |
214 |
Q |
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| T |
44110217 |
acaagaaaattcaattcctactaaaaaaa-tatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgccaggttcttc |
44110119 |
T |
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| Q |
215 |
aaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatctgctttaaaactcttgcattttgtaaaataaactcaacgaaactgattgaactat |
314 |
Q |
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| T |
44110118 |
aaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatcagctttaaaactcttgcattttgtaaaataaactcaacgaaactgattgaactat |
44110019 |
T |
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| Q |
315 |
aatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggcactggaattaaagcatagtctctctta |
400 |
Q |
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| T |
44110018 |
aatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggccctggaattaatgcatagtctctctta |
44109933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 40276975 - 40276847
Alignment:
| Q |
283 |
taaaataaactcaacgaaactgattgaactata---------atatccatgaaagtctgaaatctgaagcatcttgagagaaga--tttgaaacaataag |
371 |
Q |
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| T |
40276975 |
taaaagaaactcaatgaaactgattgaactatatataatagaatatccatgaaaatttgaaatgtgaagtatcttgagagaagaaatttgaaacaataag |
40276876 |
T |
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| Q |
372 |
gcactggaattaaagcatagtctctctta |
400 |
Q |
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| T |
40276875 |
gcactggaatttatgcatagtttctctta |
40276847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 40450314 - 40450433
Alignment:
| Q |
265 |
taaaactcttgcattttgtaaaataaactcaacgaaactgattgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaa |
364 |
Q |
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| T |
40450314 |
taaaagtcttgcattttttaaaacaaactcaatgaattggattccacgatcagatccatcatattttgaaatgtgaagcatcttgagagaagatttgaaa |
40450413 |
T |
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| Q |
365 |
caataaggcactggaattaa |
384 |
Q |
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| T |
40450414 |
caacaaggcactggaattaa |
40450433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 40450213 - 40450254
Alignment:
| Q |
170 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
211 |
Q |
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| T |
40450213 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40450254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 40507017 - 40507058
Alignment:
| Q |
170 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
211 |
Q |
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| T |
40507017 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40507058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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