View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_low_7 (Length: 396)
Name: NF15521_low_7
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 26793149 - 26792777
Alignment:
| Q |
13 |
aatatattatgttgaaaaggtacatagcaagtatactttgatactttacttaatcaattaaccagccattagatgctgatcttatcaccacatatgttat |
112 |
Q |
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| T |
26793149 |
aatatattatgttgaaaaggtacatagcaagtatactttgatactttacttaatcaattaaccagccattagatgctgatcttatcaccacatttgttat |
26793050 |
T |
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| Q |
113 |
tattatattatgtaaaatatgtaatatgtcgttatcaatggaaagaagattaaag----caatggaaacatactgcttacaaattgatggacattatgtt |
208 |
Q |
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| T |
26793049 |
tattatattatgtaaaatatgtaatatgtcgttatcaatggaaagaagattaaagcaatcaatggaaacatactgcttacaaattgatggacattatgtt |
26792950 |
T |
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| Q |
209 |
tgggttgttatgggtcttgaaaacatttctgaaatgcacaattttaaagtnnnnnnnntaaaattctattgaac-tttttgatctaccaacgttacaact |
307 |
Q |
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| T |
26792949 |
tgggttgttatgggtcttgaaaacatttctgaaatgcacaattttaaagtaaaaaaaataaaattctattgaacttttttgatctaccaacgttacaact |
26792850 |
T |
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| Q |
308 |
aattgatgcttgtgaaatccacaagtattctaaccatccatgaccatttttcaaagatcttgcactaagcttg |
380 |
Q |
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| T |
26792849 |
aattgatggttgtgaaatccaaaagtattctaaccatccatgaccatttttcaaagatcttgctctaagcttg |
26792777 |
T |
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