View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15521_low_8 (Length: 396)
Name: NF15521_low_8
Description: NF15521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15521_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 28381624 - 28381984
Alignment:
| Q |
15 |
aaaaaccaaaaataaaccatttcaagcagcactattttcaaaacagaaaattaaatgaatgatatannnnnnngaataatgaatgaatgcctttatattc |
114 |
Q |
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| T |
28381624 |
aaaaaccaaaaa-aaaccatttcaagcagcactattttcaaaacagaaaattaaatgaatgatatctttttttgaataatgaatgaatgcctttatattc |
28381722 |
T |
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| Q |
115 |
aaaatatttcaccggaagcagccatctcccacgatcaattccatccgtcaccaccacccgccaccgcctacaagggcaaagctgatctgttagccacata |
214 |
Q |
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| T |
28381723 |
aagatatttcaccggaagcagccatctcccacgatcaattccatccgtcaccaccacccgccaccgcctacaagggcaaagctgatctgttagccacata |
28381822 |
T |
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| Q |
215 |
cgaaccatgcgaatatccaccaccattgttcacaatcggcgaatacgcgaaataaaccggttgaccggttggtccagtaatcggcctcatagcttgatac |
314 |
Q |
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| T |
28381823 |
agaaccatgcgaatatccaccaccattgtttacaatcggcgaatacgcaaaataaaccggttgaccagttggtccagtaatcggcctcatagcttgatac |
28381922 |
T |
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| Q |
315 |
aatccagaaggtgttggaatcaaataaaccggtaacggttcatttacataccccatcgaata |
376 |
Q |
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| T |
28381923 |
aatccagaaggtgttggaatcaaataaaccggtaacggttcatttacataccccatcgaata |
28381984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 373
Target Start/End: Complemental strand, 28341879 - 28341763
Alignment:
| Q |
257 |
atacgcgaaataaaccggttgaccggttggtccagtaatcggcctcatagcttgatacaatccagaaggtgttggaatcaaataaaccggtaacggttca |
356 |
Q |
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|||||||||||||||||||| ||| ||||||| || | ||||||||| ||||| |||||||| |||| ||||||||||||||||||||||||| ||||| |
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| T |
28341879 |
atacgcgaaataaaccggttcaccaattggtccggttaccggcctcattgcttggtacaatcctgaagatgttggaatcaaataaaccggtaacagttca |
28341780 |
T |
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| Q |
357 |
tttacataccccatcga |
373 |
Q |
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| T |
28341779 |
gttgaataccccgtcga |
28341763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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