View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15522_low_5 (Length: 640)
Name: NF15522_low_5
Description: NF15522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15522_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 104 - 623
Target Start/End: Complemental strand, 5467258 - 5466737
Alignment:
| Q |
104 |
cttttttgattccttaacaaagatactccctagcatttgcgaacaagaaatgaaatgcaacttaccaaaatgaatccttcttttcttgtgttaataattc |
203 |
Q |
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| T |
5467258 |
cttttttgattccttaacaaagatactccctagcatttgcgaacaagaaatgaaatgcaacttaccaaaatgaatccttcttttcttgtgttaataattc |
5467159 |
T |
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| Q |
204 |
ttcaatagaaatgtcagaaaattcctcatcttttctctctcccatcttacaggatttttccttctccatggaaactccaatttcaagcatctttatagac |
303 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5467158 |
ttcaaaagaaatgtcagaaaattcctcatcttttctctctcccatcttacaggatttttccttctccatggaaactccaatttcaagcatctttatagac |
5467059 |
T |
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| Q |
304 |
aaaggaatgtgtaattagtacataataacaaaataatatgtcagttacaacctgcatacacaaaatattgttaggatacacaaaatatacaaaatcgata |
403 |
Q |
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| T |
5467058 |
aaaggaatgtgtaattagtacataataacaaaataatatgtcagttacaacctgcatacacaaaatattgttaggatacacaaaatatacaaaatcgata |
5466959 |
T |
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| Q |
404 |
aggaacataaacgaagtagcatacac--aatattgttaggataagagcaaaaaattacaactaataagccccataagcccgaaaatgtcacattgatgat |
501 |
Q |
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| T |
5466958 |
aggaacataaacgaagtagcatacacaaaatattgttaggataagagcaaaatattacaactaataagccccataagccagaaaatgtcacattgatgat |
5466859 |
T |
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| Q |
502 |
atgtagagcttgtggtaaattaccttgttatatgctggtgagagtttaagctgttgctgaagccagttataaacaaaagcatcctcttctaatcgttttc |
601 |
Q |
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| T |
5466858 |
atgtagagcttgtggtaaattaccctgttatatgctggtgagagtttaagctgttgctgaagccagttataaacaaaagcatcctcttctaatcgttttc |
5466759 |
T |
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| Q |
602 |
gctctaattcaaacttgtatac |
623 |
Q |
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| T |
5466758 |
gctctaattcaagcttgtatac |
5466737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5467458 - 5467387
Alignment:
| Q |
1 |
ttttcttaaattttcaccagtgttgacgtatctgtgtcagagtcgtgtctagtatttgtgtcagtgtttcat |
72 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| | || ||||||||||||||||||| |||||||| |
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| T |
5467458 |
ttttcttaaattatcaccggtgttgacgtatctgtgtcggtgttgtgtctagtatttgtgtcattgtttcat |
5467387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 42980219 - 42980291
Alignment:
| Q |
162 |
aacttaccaaaatgaatccttcttttcttgtgttaataattcttcaatagaaatgtcagaaaattcctcatct |
234 |
Q |
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| T |
42980219 |
aactaaccaaaacgaatccttcttctcttgtgctaataattcttcaaaagaaatgtcggcaaattcatcatct |
42980291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 622
Target Start/End: Original strand, 42980521 - 42980620
Alignment:
| Q |
523 |
accttgttatatgctggtgagagtttaagctgttgctgaagccagttataaacaaaagcatcctcttctaatcgttttcgctctaattcaaacttgtata |
622 |
Q |
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| T |
42980521 |
acctttttgtatgcaggtgaaagtttaagctggtattgaagtgagttataaacaaaagcatcctcctctaatcttttttgttctaattctagcttgtata |
42980620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 31523277 - 31523231
Alignment:
| Q |
26 |
acgtatctgtgtcagagtcgtgtctagtatttgtgtcagtgtttcat |
72 |
Q |
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| T |
31523277 |
acgtatctgtgtcagcgtcgtgtctggtgtctgtgtcagtgtttcat |
31523231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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