View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15522_low_7 (Length: 518)
Name: NF15522_low_7
Description: NF15522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15522_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 169 - 502
Target Start/End: Complemental strand, 11357992 - 11357659
Alignment:
| Q |
169 |
ctatacccaaatggccacgcttagctgcaacatgaaatgcattcatatcagatttagacctgattttgagtatctccaaatcacataaccttaacaagaa |
268 |
Q |
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| T |
11357992 |
ctatacccaaatggccacgcttagctgcaacgtgaaatgcattcatatcagatttagacctgattttgagtatctccaaatcacataaccttaacaagaa |
11357893 |
T |
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| Q |
269 |
gctgaacaaatccttaacaccattttctgcagctatatacaataacgtttccccagcatcattctgcatggacaagaattcagaaattggtgatggccca |
368 |
Q |
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| T |
11357892 |
gctgaacaaatccttaacaccattttctgcagctatatacaataacgtttccccagcatcattctgcatggacaagaattcagaaattggtgatggccca |
11357793 |
T |
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| Q |
369 |
tttgaggattcacctttgttaacatatttcagcacttctttgagtccttcaagatcaccagatcgaaccacattgaaaatatcttgatgggttatgaagc |
468 |
Q |
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| T |
11357792 |
tttgaggattcacctttgttaacatatttcagcacttctttgagtccttcaagatcaccagatcgaaccacattgaaaatatcttgatgggttatgaagc |
11357693 |
T |
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| Q |
469 |
atagtgactttgaatccatgtcatgcaacaaaaa |
502 |
Q |
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| T |
11357692 |
atagtgactttgaatccatgtcatgcaacaaaaa |
11357659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 11358159 - 11358060
Alignment:
| Q |
1 |
tggcatgttacatgtatataacaacaacaaaaaatcagaaactattctgatggtgtagctcagtggattaacnnnnnnnccatgtctaggtttgatccat |
100 |
Q |
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| T |
11358159 |
tggcatgttacatgtatataa-aacaacaaaaaatcagaaactattctgatggtgtagctcagtggattaacaaaaaaaccatgtctaggtttgatccat |
11358061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 44397382 - 44397335
Alignment:
| Q |
179 |
atggccacgcttagctgcaacatgaaatgcattcatatcagatttaga |
226 |
Q |
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| T |
44397382 |
atggccacgcttagctgcaacatgaaaagcgttcatatcagacttaga |
44397335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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