View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15522_low_8 (Length: 418)
Name: NF15522_low_8
Description: NF15522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15522_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 32469015 - 32469207
Alignment:
| Q |
75 |
caacatagtccacaaattgcactcgtgggatacactgcttctacatatgtcatttgtcaacattaaataaatagtccaaaccaacttatttatgatatgt |
174 |
Q |
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| T |
32469015 |
caacatagtccacaaattgcactcgtgggatacactgcttctacatatgtcatttgtcaacattaaataaatagtccaaaccaacttatttatgatatgt |
32469114 |
T |
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| Q |
175 |
agctcaacaatgaagctattgtcccaccttgaattgatgg--nnnnnnnntgaatgatcactttgtttacctcatttttgtggcatagtgatg |
265 |
Q |
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| T |
32469115 |
agctcaacaatgaagttattgtcccaccttgaattgatggaaaaaaaaaatgaatgatcactttgtttacctcatttttgtggcatagtgatg |
32469207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 32469262 - 32469347
Alignment:
| Q |
316 |
aactagggaatgacacttcttactatagctgtatcactcaagagcttgaaaccaacatgcacaaatggtatctgcaacaaggcttc |
401 |
Q |
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| T |
32469262 |
aactagggaatgacacttcttactatagctgtatcactcaagagcttgaaaccaacatgcacaaatggtatatgcaacaaggcttc |
32469347 |
T |
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