View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15523_high_1 (Length: 809)

Name: NF15523_high_1
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15523_high_1
NF15523_high_1
[»] chr5 (8 HSPs)
chr5 (13-662)||(11698940-11699589)
chr5 (700-793)||(11699627-11699720)
chr5 (332-377)||(35777109-35777154)
chr5 (330-377)||(2532595-2532642)
chr5 (332-377)||(7762337-7762382)
chr5 (331-376)||(1039841-1039886)
chr5 (332-377)||(2532020-2532065)
chr5 (332-377)||(13568169-13568214)
[»] chr2 (5 HSPs)
chr2 (330-377)||(7190044-7190091)
chr2 (332-377)||(43870215-43870260)
chr2 (332-377)||(28137791-28137836)
chr2 (331-373)||(17688219-17688261)
chr2 (332-377)||(39377635-39377680)
[»] chr3 (8 HSPs)
chr3 (332-377)||(43476125-43476170)
chr3 (328-376)||(42166504-42166552)
chr3 (331-377)||(43478924-43478970)
chr3 (329-377)||(1388198-1388246)
chr3 (332-370)||(48250970-48251008)
chr3 (332-377)||(5138361-5138406)
chr3 (332-377)||(16484550-16484595)
chr3 (332-377)||(47074204-47074249)
[»] chr8 (11 HSPs)
chr8 (329-377)||(43262356-43262404)
chr8 (332-377)||(34366846-34366891)
chr8 (331-377)||(44052320-44052366)
chr8 (332-377)||(7577682-7577727)
chr8 (329-374)||(10749770-10749815)
chr8 (331-376)||(28694513-28694558)
chr8 (331-373)||(27704628-27704670)
chr8 (331-377)||(41250165-41250211)
chr8 (332-377)||(7577050-7577095)
chr8 (332-377)||(39601638-39601683)
chr8 (332-377)||(39604413-39604458)
[»] chr4 (5 HSPs)
chr4 (330-377)||(51492004-51492051)
chr4 (331-377)||(44674098-44674144)
chr4 (333-376)||(16473774-16473817)
chr4 (330-377)||(37015863-37015910)
chr4 (331-376)||(37880597-37880642)
[»] chr7 (7 HSPs)
chr7 (331-377)||(47741713-47741759)
chr7 (332-374)||(46738736-46738778)
chr7 (332-377)||(17834422-17834467)
chr7 (326-377)||(36185650-36185701)
chr7 (332-377)||(36185124-36185169)
chr7 (332-377)||(40323202-40323247)
chr7 (332-377)||(40323725-40323770)
[»] chr1 (17 HSPs)
chr1 (332-377)||(46320547-46320592)
chr1 (332-377)||(50117907-50117952)
chr1 (328-375)||(16281688-16281735)
chr1 (330-377)||(32161386-32161433)
chr1 (332-377)||(253028-253073)
chr1 (332-377)||(15354652-15354697)
chr1 (332-377)||(20114539-20114584)
chr1 (332-377)||(26944413-26944458)
chr1 (330-377)||(44596793-44596840)
chr1 (330-377)||(46319682-46319729)
chr1 (332-377)||(253371-253416)
chr1 (332-369)||(471165-471202)
chr1 (332-377)||(27487730-27487775)
chr1 (332-377)||(32160666-32160711)
chr1 (332-377)||(33206097-33206142)
chr1 (332-377)||(44599000-44599045)
chr1 (332-377)||(51271685-51271730)
[»] chr6 (5 HSPs)
chr6 (332-377)||(11687986-11688031)
chr6 (331-377)||(117928-117974)
chr6 (331-377)||(28362828-28362874)
chr6 (332-377)||(11687393-11687438)
chr6 (332-377)||(29061230-29061275)
[»] scaffold0116 (1 HSPs)
scaffold0116 (330-376)||(16050-16096)
[»] scaffold0206 (1 HSPs)
scaffold0206 (332-377)||(13301-13346)
[»] scaffold0184 (1 HSPs)
scaffold0184 (324-377)||(17957-18010)
[»] scaffold0078 (1 HSPs)
scaffold0078 (324-377)||(54834-54887)


Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 13 - 662
Target Start/End: Original strand, 11698940 - 11699589
Alignment:
Q  13 attattctattattaaacctacaaattagaagtttatacattcaagtttagattcaaagatccggattttagtcttcttgatgtttttggaggaagataa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11698940 attattctattattaaacctacaaattagaagtttatacattcaagtttagattcaaagatccggattttagtcttcttgatatttttggaggaagataa 11699039  T
Q  113 atgtcaatacgtccgtaaatatttctctatttgtaagattttctctaccttgaactgagacatcatcctctcactttaaatttatctcataaaagaaatt 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11699040 atgtcaatacgtctgtaaatatttctctatttgtaagattttctctaccttgaactgagacatcatcctctcactttaaatttatctcataaaagaaatt 11699139  T
Q  213 aaataaaaagagttttaaaatttcatatcacaccaaagtgaattactatataatcttatttttaagtatactactactattaatccttcaaagaagtata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11699140 aaataaaaagagttttaaaatttcatatcacaccaaagtgaattactatataatcttatttttaagtatactactactattaatccttcaaagaagtata 11699239  T
Q  313 ctgtggactacaatatttagagaattgatgttctcacattacataaggttgtgccacacgagtaacgtgggaacagcaattcaccaatatttattacttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11699240 ctgtggactacaatatttagagaattgatgttctcacattacataaggttgtgccacacgagtaatgtgggaacagcaattcaccaatatttattacttt 11699339  T
Q  413 tttgtttgacaaattaatcaaaatatttattactattaatccnnnnnnngaatacaacacaacagcttaaccaacacaagtgcgaaacagggtcgtcgtc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11699340 tttgtttgacaaattaatcaaaatatttattactattaatcctttttttgaatacaacacaacagcttaaccaacacaagtgcgaaacagggtcgtcgtc 11699439  T
Q  513 ttcttcctccagcagcatcgttctagggttcgcaacacaattccatttccctcttttccattcttcattatcaactgaaagatgcagaaattgggggaat 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11699440 ttcttcctccagcagcatcgttctagggttcgcaacacaattccatttccctcttttccattcttcattatcaactgaaagatgcagaaattgggggaat 11699539  T
Q  613 tcaaactacctcatttcttcaattacccaccttacttcacgtaattcctc 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11699540 tcaaactacctcatttcttcaattacccaccttacttcacgtaattcctc 11699589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 700 - 793
Target Start/End: Original strand, 11699627 - 11699720
Alignment:
Q  700 accaaaactaaatatcaactttgttggttaattccttttttgtgcatattcaaatcaaccaagtaactatttcatttttaaataaaaaatttca 793  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11699627 accaaaactaaatatcaactttgttggttaattccttttttgtgcatattcaaatcaaccaagtaactatttgatttttaaataaaaaatttca 11699720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 35777154 - 35777109
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  35777154 gagaattgatgttcccacgttacataaggttgtgccacacgagtaa 35777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 2532642 - 2532595
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  2532642 tagagaattgctgttcccacattacataaggctgtgccacacgagtaa 2532595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 7762382 - 7762337
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||    
T  7762382 gagaattgctgttcccacattacataaggctgtgccacacgagtaa 7762337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 1039886 - 1039841
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagta 376  Q
    ||||||||||||||  ||| |||||||| |||||||||||||||||    
T  1039886 agagaattgatgtttacactttacataaagttgtgccacacgagta 1039841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 2532020 - 2532065
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| |||||||||| |||||    
T  2532020 gagaattgttgttcccacattacataaggctgtgccacacaagtaa 2532065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 13568214 - 13568169
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||| ||||||||    
T  13568214 gagaattgttgttcccacattacataaggctgtgccatacgagtaa 13568169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 7190091 - 7190044
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7190091 tagagaattgatgttcccacattacataaggttgtgccacacgagtaa 7190044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 43870260 - 43870215
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  43870260 gagaattgatgttcccacattacataaggttgtgccacacgagtaa 43870215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 28137791 - 28137836
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| ||||||| |||||||||||||||||||||||    
T  28137791 gagaattgctgttcccacattatataaggttgtgccacacgagtaa 28137836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 17688219 - 17688261
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacga 373  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||    
T  17688219 agagaattgctgttcccacattacataaggctgtgccacacga 17688261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 39377635 - 39377680
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||  |||||||||||||| ||||||||||||||||    
T  39377635 gagaattgctgtttccacattacataaggctgtgccacacgagtaa 39377680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 43476125 - 43476170
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  43476125 gagaattgttgttctcacattacataaggttgtgccacacgagtaa 43476170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 42166552 - 42166504
Alignment:
Q  328 tttagagaattgatgttctcacattacataaggttgtgccacacgagta 376  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  42166552 tttagagaattgatgtttacacattacataaggttgtgccacacgagta 42166504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 43478970 - 43478924
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  43478970 agagaattgttgttcccacattacataaggttgtgccacacgagtaa 43478924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 1388246 - 1388198
Alignment:
Q  329 ttagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||||    
T  1388246 ttagagaattgttgttcccacattacataaggctgtgccacacaagtaa 1388198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 48251008 - 48250970
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccaca 370  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  48251008 gagaattgttgttcccacattacataaggttgtgccaca 48250970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 5138406 - 5138361
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  5138406 gagaattgctgttcccacatgacataaggctgtgccacacgagtaa 5138361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 16484595 - 16484550
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||| | ||||||||||| |||||||||||||||||||    
T  16484595 gagaattgttgtacccacattacatagggttgtgccacacgagtaa 16484550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 47074249 - 47074204
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| |||||||| ||||||||| ||| ||||||||||||||    
T  47074249 gagaattgttgttctcatattacataatgttctgccacacgagtaa 47074204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 43262356 - 43262404
Alignment:
Q  329 ttagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  43262356 ttagagaattgttgttctcacattacataaggctgtgccacacgagtaa 43262404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 34366846 - 34366891
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||    
T  34366846 gagaattgatgttcccacattacataaggctgtgccacacgagtaa 34366891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 44052366 - 44052320
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  44052366 agagaattgttgttcccacattacataaggttgtggcacacgagtaa 44052320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 7577727 - 7577682
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||    
T  7577727 gagaattgctgttcccacattacataaggctgtgccacacgagtaa 7577682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 10749815 - 10749770
Alignment:
Q  329 ttagagaattgatgttctcacattacataaggttgtgccacacgag 374  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||    
T  10749815 ttagagaattgctgtttacacattacataaggttgtgccacacgag 10749770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 28694558 - 28694513
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagta 376  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||    
T  28694558 agagaattgctgttaacacattacataaggttgtgccacacgagta 28694513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 27704670 - 27704628
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacga 373  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||    
T  27704670 agagaattgctgttcccacattacataaggctgtgccacacga 27704628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 41250211 - 41250165
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||| ||||| |||||| |||||||||||| |||||||||||    
T  41250211 agagaattgttgttcccacattgcataaggttgtggcacacgagtaa 41250165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 7577050 - 7577095
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  7577050 gagaattgctgttcccacattacataaggctgtgccacatgagtaa 7577095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 39601638 - 39601683
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| | ||| |||||||||||||| ||||||||||||||||    
T  39601638 gagaattgctattcccacattacataaggctgtgccacacgagtaa 39601683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 39604458 - 39604413
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||| | |||||||||||||| ||||||||||||||||    
T  39604458 gagaattgttgtccccacattacataaggctgtgccacacgagtaa 39604413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 51492004 - 51492051
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  51492004 tagagaattgttgttcccacattacataaggttgtgccacacgagtaa 51492051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 44674098 - 44674144
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  44674098 agagaattgttgttcccacattacataaggttgtgccacacgagtaa 44674144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 16473817 - 16473774
Alignment:
Q  333 agaattgatgttctcacattacataaggttgtgccacacgagta 376  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||    
T  16473817 agaattgctgtttacacattacataaggttgtgccacacgagta 16473774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 37015863 - 37015910
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  37015863 tagagaattgttgttcccacattacataaggatgtgccacatgagtaa 37015910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 37880597 - 37880642
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagta 376  Q
    ||||||||| ||||  |||||||||||||| |||||||||||||||    
T  37880597 agagaattgctgtttacacattacataaggctgtgccacacgagta 37880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 47741713 - 47741759
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  47741713 agagaattgttgttctcacattacataaggttgtgccacactagtaa 47741759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 46738736 - 46738778
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgag 374  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  46738736 gagaattgttgttcccacattacataaggttgtgccacacgag 46738778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 17834422 - 17834467
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||    
T  17834422 gagaattgatgtttacacattacataaggctgtgccacacgagtaa 17834467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 377
Target Start/End: Complemental strand, 36185701 - 36185650
Alignment:
Q  326 tatttagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||| ||||||||| ||||  |||||||||||||| ||||||||||||||||    
T  36185701 tattaagagaattgctgtttccacattacataaggctgtgccacacgagtaa 36185650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 36185124 - 36185169
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| | ||| |||||| ||||||||||||||||||||||||    
T  36185124 gagaattgcttttcccacattccataaggttgtgccacacgagtaa 36185169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 40323202 - 40323247
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  40323202 gagaattgttgttcccacattacataaggctgtgccacatgagtaa 40323247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 40323770 - 40323725
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| |||||||||| |||||    
T  40323770 gagaattgctgttcccacattacataaggctgtgccacacaagtaa 40323725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 46320592 - 46320547
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||    
T  46320592 gagaattgctgttcccacattacataaggttgtgccacacgagtaa 46320547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 50117952 - 50117907
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||    
T  50117952 gagaattgctgttcccacattacataaggttgtgccacacgagtaa 50117907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 16281688 - 16281735
Alignment:
Q  328 tttagagaattgatgttctcacattacataaggttgtgccacacgagt 375  Q
    |||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  16281688 tttagagaattgatgttcccacattacataaggttgtggcacatgagt 16281735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 32161433 - 32161386
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  32161433 tagagaattgttgttcccacattacataaggctgtgccacacgagtaa 32161386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 253028 - 253073
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||    
T  253028 gagaattgctgttcccacattacataaggctgtgccacacgagtaa 253073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 15354697 - 15354652
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  15354697 gagaattgctgttcccacattacataaggttgtgtcacacgagtaa 15354652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 20114539 - 20114584
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||    
T  20114539 gagaattgttgttcccacattacataaggctgtgccacacgagtaa 20114584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 26944413 - 26944458
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||    
T  26944413 gagaattgttgttcccacattacataaggctgtgccacacgagtaa 26944458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 44596793 - 44596840
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  44596793 tagagaattgttgttcccacattacataagactgtgccacacgagtaa 44596840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 46319682 - 46319729
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||| ||||| ||||||||||| || ||||||||||||||||    
T  46319682 tagagaattgttgttcccacattacatatggctgtgccacacgagtaa 46319729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 253416 - 253371
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||| ||||| ||||||||||||||||    
T  253416 gagaattgttgttcccacattacgtaaggctgtgccacacgagtaa 253371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 471202 - 471165
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccac 369  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  471202 gagaattgttgttcccacattacataaggttgtgccac 471165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 27487775 - 27487730
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||||||||| ||||||  ||||||||||| |||||||||||    
T  27487775 gagaattgatgttcccacatttgataaggttgtggcacacgagtaa 27487730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 32160666 - 32160711
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| || || |||||||||||||| ||||||||||||||||    
T  32160666 gagaattgctgatcccacattacataaggctgtgccacacgagtaa 32160711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 33206142 - 33206097
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||  ||||||||||||||||    
T  33206142 gagaattgctgttcccacattacataagactgtgccacacgagtaa 33206097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 44599045 - 44599000
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||| | ||||||||||| |||||||||||||||||||    
T  44599045 gagaattgttgtacccacattacatagggttgtgccacacgagtaa 44599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 51271730 - 51271685
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| || ||||||||||||||||||||||| ||||    
T  51271730 gagaattgttgttcccaaattacataaggttgtgccacacgggtaa 51271685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 11688031 - 11687986
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||    
T  11688031 gagaattgctgttcccacattacataaggctgtgccacacgagtaa 11687986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 117974 - 117928
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||    
T  117974 agagaattgatgttcccacatttgataaggttgtgtcacacgagtaa 117928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 28362874 - 28362828
Alignment:
Q  331 agagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    ||||||||| | ||| |||||||||||||| ||||||||||||||||    
T  28362874 agagaattgctattcccacattacataaggctgtgccacacgagtaa 28362828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 11687393 - 11687438
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  11687393 gagaattgctgttcccacattatataaagttgtgccacacgagtaa 11687438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 29061230 - 29061275
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||| |||||||||||||| |||| |||||||||||    
T  29061230 gagaattggtgttcccacattacataaggctgtggcacacgagtaa 29061275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 16096 - 16050
Alignment:
Q  330 tagagaattgatgttctcacattacataaggttgtgccacacgagta 376  Q
    |||||||||| ||||  ||| ||||||||||||||||||||||||||    
T  16096 tagagaattgctgtttacactttacataaggttgtgccacacgagta 16050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 13346 - 13301
Alignment:
Q  332 gagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||||||| ||||  |||||||||||||| ||||||||||||||||    
T  13346 gagaattgctgtttccacattacataaggctgtgccacacgagtaa 13301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 17957 - 18010
Alignment:
Q  324 aatatttagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||| ||||||||||||||||| ||||||  |||| |||||| |||||||||||    
T  17957 aataattagagaattgatgttcccacatttgataaagttgtggcacacgagtaa 18010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 54887 - 54834
Alignment:
Q  324 aatatttagagaattgatgttctcacattacataaggttgtgccacacgagtaa 377  Q
    |||| ||||||||||||||||| ||||||  |||| |||||| |||||||||||    
T  54887 aataattagagaattgatgttcccacatttgataaagttgtggcacacgagtaa 54834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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