View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_high_13 (Length: 445)
Name: NF15523_high_13
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 5173509 - 5173923
Alignment:
| Q |
15 |
aacctgtggtgacctcttgatgatttctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagattt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173509 |
aacctgtggtgacctcttgatgatttctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagattt |
5173608 |
T |
|
| Q |
115 |
ctaatgataaaaatagatttgatgtctcaattgtgtcactaaattt-ggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173609 |
ctaatgataaaaatagatttgatgtctcaattgtgtcactaaattttggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttg |
5173708 |
T |
|
| Q |
214 |
aaagcagcatttttagctataggataatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173709 |
aaagcagcatttttagctataggataatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgc |
5173808 |
T |
|
| Q |
314 |
aactatatagactaatccctcgagttaaatagagtcacgagggtgatacaactctccattaagagttttaacgctgctgcattctcagagctggattgaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173809 |
aactatatagactaatccctcgagttaaatagagtcacgagggtgatacaactctccattaagagttttaacgctgctgcattctcagagctggattgaa |
5173908 |
T |
|
| Q |
414 |
acctaggacctatgt |
428 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5173909 |
acctaggacctatgt |
5173923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University