View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15523_high_14 (Length: 437)
Name: NF15523_high_14
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 12618832 - 12619246
Alignment:
| Q |
1 |
gaaagtgattataaagaaaaagtaaagatggagtatgannnnnnnnnnnnagggtcagttttggcggttactaagaaaaggaagttgaggtgtggagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12618832 |
gaaagtgattataaagaaaaagtaaagatggagtatgatgtgtgtgtgtgagggtcagttttggcggttactaagaaaaggaagttgaggtgtggagaaa |
12618931 |
T |
|
| Q |
101 |
aatgggggaacatagtgttaatatatannnnnnnnnatttaaacaaagaagtaactaaattcnnnnnnnnnnnnnnnnaaatgaaattatctagattctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12618932 |
aatgggggaacatagtgttaatatat-tttttttttatttaaacaaagaagtaactaaattcttttttatatttttt-aaatgaaattatctagattctt |
12619029 |
T |
|
| Q |
201 |
ttttgactaaatgtgtgcaactagatttggacctataacatcttgcaaaccactaaaaatataagactgttct--------atatggtgatttttctcag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
12619030 |
ttttgactaaatgtgtgcaactagatttggacctataacatcttgcaaaccactaaaaatataagactgttctttatacatatatggtgatttttatcag |
12619129 |
T |
|
| Q |
293 |
catccatcaaacatcaattaacagtcatttaatacttttgagatcaattgaggcattttttaaatcagcttactcgatttataaagtgtactaaactata |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12619130 |
catccatcaaacatcaattaacagtcatttaatacttttgagatcaattgaggcattttttaaatcagcttactcgatttataaagtgtactaaactata |
12619229 |
T |
|
| Q |
393 |
gctaattatcgttcgac |
409 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12619230 |
gctaattatcgttcgac |
12619246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University