View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_high_23 (Length: 367)
Name: NF15523_high_23
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_23 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 43 - 360
Target Start/End: Complemental strand, 12618792 - 12618475
Alignment:
| Q |
43 |
ttgatcttgatcatcatggttcctttcaactcaagaaagggacgaaaattaagctcaaaagccatagctgatgcaacttcatggtattgttctattgttc |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12618792 |
ttgatcttgatcatcatggttcctttcaactcaagaaagggacgaaaattaagctcaaaagccatagctgatgcaacttcatggtattgttctattgttc |
12618693 |
T |
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| Q |
143 |
ttgtagcactcatacttctaaccatttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12618692 |
ttgtagcactcatacttctaaccatttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaa |
12618593 |
T |
|
| Q |
243 |
accatgcgacgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatata |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12618592 |
accatgcgacgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatata |
12618493 |
T |
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| Q |
343 |
catgaccctgatgatgtc |
360 |
Q |
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|||||||||||||||||| |
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| T |
12618492 |
catgaccctgatgatgtc |
12618475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 66 - 360
Target Start/End: Complemental strand, 12631585 - 12631291
Alignment:
| Q |
66 |
tttcaactcaagaaagggacgaaaattaagctcaaaagccatagctgatgcaacttcatggtattgttctattgttcttgtagcactcatacttctaacc |
165 |
Q |
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| T |
12631585 |
tttcaactcaagaaagggagcagtttcaagttcaaaagccatagctgatgcagcttcatggtattgtgctattcttcttgcagaacttatacttctaacc |
12631486 |
T |
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| Q |
166 |
atttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaatctatgtag |
265 |
Q |
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| T |
12631485 |
atatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaatctatgtgg |
12631386 |
T |
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| Q |
266 |
ttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatgtc |
360 |
Q |
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| T |
12631385 |
ttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgtc |
12631291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 65 - 360
Target Start/End: Complemental strand, 16783680 - 16783385
Alignment:
| Q |
65 |
ctttcaactcaagaaagggacgaaaattaagctcaaaagccatagctgatgcaacttcatggtattgttctattgttcttgtagcactcatacttctaac |
164 |
Q |
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|||||||||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||| ||||| |||||||||| ||||| ||||||| |
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| T |
16783680 |
ctttcaactcaagaaagggagcaattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatttttcttgtagccctcattcttctaag |
16783581 |
T |
|
| Q |
165 |
catttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaatctatgta |
264 |
Q |
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| T |
16783580 |
catatttagagatagctctatgattccaaataataatgatcacaacatgatagagagcaaccatttcttgtcttccaaaccatgcgacgaaatctatgta |
16783481 |
T |
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| Q |
265 |
gttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatgtc |
360 |
Q |
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| T |
16783480 |
gttggtgaaggtgagacactaaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcctgatgatgtc |
16783385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 16789590 - 16789657
Alignment:
| Q |
65 |
ctttcaactcaagaaagggacgaaaattaagctcaaaagccatagctgatgcaacttcatggtattgt |
132 |
Q |
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| T |
16789590 |
ctttcaactcaataaagggaccaatttcaagtttaaaagccatagctgatgcagcttcatggtattgt |
16789657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12618836 - 12618808
Alignment:
| Q |
1 |
ctttccaaaccattcttttctctcatcaa |
29 |
Q |
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| T |
12618836 |
ctttccaaaccattcttttctctcatcaa |
12618808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 19024970 - 19024861
Alignment:
| Q |
251 |
acgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccc |
350 |
Q |
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|||||||||| || || |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||| |||||||||||||| ||||| |
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| T |
19024970 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
19024871 |
T |
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| Q |
351 |
tgatgatgtc |
360 |
Q |
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| T |
19024870 |
tgatgatgtc |
19024861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 20729666 - 20729775
Alignment:
| Q |
251 |
acgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccc |
350 |
Q |
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|||||||||| || || |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||| |||||||||||||| ||||| |
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| T |
20729666 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
20729765 |
T |
|
| Q |
351 |
tgatgatgtc |
360 |
Q |
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| T |
20729766 |
tgatgatgtc |
20729775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 26303227 - 26303309
Alignment:
| Q |
277 |
gagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatgt |
359 |
Q |
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||||||||| | ||||| ||||| |||||| |||||||| ||||||||| | ||||| ||||| ||||| ||||||||||| |
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| T |
26303227 |
gagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatgatcctgatgatgt |
26303309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 7027 - 7064
Alignment:
| Q |
177 |
tagctatatgattccaaatgatcatgatcacaacatca |
214 |
Q |
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||||| ||||||||||||| |||||||||||||||||| |
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| T |
7027 |
tagctctatgattccaaataatcatgatcacaacatca |
7064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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