View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_high_27 (Length: 310)
Name: NF15523_high_27
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_27 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 96 - 310
Target Start/End: Original strand, 42285128 - 42285342
Alignment:
| Q |
96 |
cattttacatacataatcaatcaaacaatatgttactcgcatttctttttactttatatttagttatgtttttattagcttagttgtcaaaaatcacaat |
195 |
Q |
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| T |
42285128 |
cattttacatacataatcaatcaaacaatatgttactcgcatttctttttactttatatttagttatgtttttattagcttagttctcaaaaatcacaac |
42285227 |
T |
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| Q |
196 |
ggaagaacgtagtttctttctactttatacttacacttttcaaagaatgcaagaacatcgtttctttcttggcataatcgtttggaggaaaagagaatca |
295 |
Q |
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| T |
42285228 |
ggaagaacgtagtttctttctactttatacttacactctttaaagaatggaagaacatcgtttctttcttggcataatcgtttggaggaaaagagaatca |
42285327 |
T |
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| Q |
296 |
ttgttgagatctatt |
310 |
Q |
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| T |
42285328 |
ttgttgagatctatt |
42285342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 42283756 - 42283840
Alignment:
| Q |
17 |
taggtgttactagaaagtttagtggaataacgatagtcatagttgagtctcattgtttacaaatgccgtttgtaaatttcatttt |
101 |
Q |
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| T |
42283756 |
taggtgtttctagaaagtttagtggaataatgatagtcatagttgagtctcattgtttacaaatgccatttgtaaattttatttt |
42283840 |
T |
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