View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_high_34 (Length: 257)
Name: NF15523_high_34
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 3175087 - 3174842
Alignment:
| Q |
12 |
aagaaaggttacttctatattgaaggtccaaagaacattgcaggttattcaactcgtcattgcaacgttgttttagatactgcaccaaaagtactaaaac |
111 |
Q |
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| T |
3175087 |
aagaaaggttacttctatattggaggcccaaagaacattgcaggttattcaactcgtcattgcaacgttgttttagatactgcaccaaaagtactaaaac |
3174988 |
T |
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| Q |
112 |
cctcaaatcttcatggtggtcttactggggcgcctcttcttaagccggtgaaacgaccagtgtctaagggtgtttctttaaaactttacactgttggacc |
211 |
Q |
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| T |
3174987 |
cctcaaatcttcatggtggtcttagtggggcgcctcttcttaagccggtgaaacgaccagtgtctaagggtgtctctttaaaactctacactgttggacc |
3174888 |
T |
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| Q |
212 |
atttgcatttgagcccaaatgtcatcattaagaaaaatatcagtga |
257 |
Q |
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| T |
3174887 |
gtttgcatttgagcccaaatgtcatcattaaggaaaatatcagtga |
3174842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 20964950 - 20965186
Alignment:
| Q |
12 |
aagaaaggttacttctatattgaaggtccaaagaacattgcaggttattcaactcgtcattgcaacgttgttttagatactgcaccaaaagtactaaaac |
111 |
Q |
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| T |
20964950 |
aagaaaggttacttctatattggtggcccaaagaacattgtaggttattcaactcgccattgcaacgttgttttagataattcaccaaaagcactaaaac |
20965049 |
T |
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| Q |
112 |
cctcaaatcttcatggtggtcttactggggcgcctcttcttaagccggtgaaacgaccagtgtctaagggtgtttctttaaaactttacactgttggacc |
211 |
Q |
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| T |
20965050 |
cttcaaatcttcatggcggtcttactgggg---ctcttcttaagccagtgaaacgatcagtgtctaaggggatttctttaaaactcttcactgttggacc |
20965146 |
T |
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| Q |
212 |
atttgcatttgagcccaaatgtcatcattaagaaaaatat |
251 |
Q |
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| T |
20965147 |
atttgcatttgagcccaaatgtcatcattaaggaaaatat |
20965186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 24540076 - 24539841
Alignment:
| Q |
12 |
aagaaaggttacttctatattgaaggtccaaagaacattgcaggttattcaactcgtcattgcaacgttgttttagatactgcaccaaaagtactaaaac |
111 |
Q |
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| T |
24540076 |
aagaaaggttacttttatattggaggtccaaagaacattacaggttattcaactcgccattgcaacgttgttttggatagtgcacctaaagtactaaaac |
24539977 |
T |
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| Q |
112 |
cctcaaatcttcatggtggtcttactggggcgcctcttcttaagccggtgaaacgaccagtgtctaagggtgtttctttaaaactttacactgttggacc |
211 |
Q |
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| T |
24539976 |
cttcaaatcttcatggtggtgttattgggg---ctcttcttaagcttgtaaaacgatcaatgtctaagggtgtttatgtaaaactcttctctgttgggcc |
24539880 |
T |
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| Q |
212 |
atttgcatttgagcccaaatgtcatcattaagaaaaata |
250 |
Q |
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| T |
24539879 |
gtttgcttttgagcccaaatgtcatcattaagaaaaata |
24539841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 41522414 - 41522179
Alignment:
| Q |
12 |
aagaaaggttacttctatattgaaggtccaaagaacattgcaggttattcaactcgtcattgcaacgttgttttagatactgcaccaaaagtactaaaac |
111 |
Q |
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| T |
41522414 |
aagaagggttacttctatattggagccccaaaaaacattacgagttgcataactcgccattgcaacgttgttttggatagtgcatcaaatggactaaaac |
41522315 |
T |
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| Q |
112 |
cctcaaatcttcatggtggtcttactggggcgcctcttcttaagccggtgaaacgaccagtgtctaagggtgtttctttaaaactttacactgttggacc |
211 |
Q |
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| T |
41522314 |
cctcaaatcttcatggtggttttactggagc---tcttcttaagcctgtgaaacaatcggtgtctaagagtgtttcgttaaaactctatattgttggacc |
41522218 |
T |
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| Q |
212 |
atttgcatttgagcccaaatgtcatcattaagaaaaata |
250 |
Q |
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| T |
41522217 |
gtttgtatttgagcccaaatgtcataattaagaaaaata |
41522179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 14674297 - 14674119
Alignment:
| Q |
69 |
cattgcaacgttgttttagatactgcaccaaaagtactaaaaccctcaaatcttcatggtggtcttactggggcgcctcttcttaagccggtgaaacgac |
168 |
Q |
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| T |
14674297 |
cattgcaatgttgttttggagagtgcaccaaatggactaaaaccatcaaatcttcatggtggtctcaccggtg---ctcatccaaaatccgtgaaacgaa |
14674201 |
T |
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| Q |
169 |
cagtgtctaagggtgtttctttaaaactttacactgttggaccatttgcatttgagcccaaatgtcatcattaagaaaaata |
250 |
Q |
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| T |
14674200 |
tagtgtctaagggtgtttccttaattcggtacaccgttgaccctcttgcatttgagcccaaatgtaatcattaaaaaaaata |
14674119 |
T |
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