View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15523_high_40 (Length: 224)
Name: NF15523_high_40
Description: NF15523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15523_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 36064603 - 36064763
Alignment:
| Q |
1 |
attcaaaaacccacatactcaccaagaggaagacttgactgacatatctcaagattccactccttcttccacctcatttaacatcgatggctcagtcact |
100 |
Q |
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| T |
36064603 |
attcaaaaacccacatactcaccaagaggaagacttgactgacatatctcaagattccactccttcttccacctcatttaacatcgatggctcagtcact |
36064702 |
T |
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| Q |
101 |
tcccactcttcttcatcatctaagaaaaggttagtacactgtacacacacttatactaatta |
162 |
Q |
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|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
36064703 |
tcccactcttcttcatcatctaagaaaaggttagta-gcagtgcacacacttatactaatta |
36064763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 36064796 - 36064853
Alignment:
| Q |
167 |
tcctaacgattaatgaccataatttcccactactcaatccgatcttgagatgatataa |
224 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
36064796 |
tcctaacgattaatgactataatttcccactactcaatccgatcttgagatgttataa |
36064853 |
T |
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